View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_low_9 (Length: 500)
Name: NF15408_low_9
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_low_9 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 25812490 - 25812006
Alignment:
| Q |
1 |
ccgaatatcagaaagaaagagacaccttaggatcttgctccaagccactaacgaactaccgaaagaccatagaccatccaaggaacatcaactactactc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25812490 |
ccgaatatcagaaagaaagagacaccttaggatcttgctccaagccactaacgaactaccgaaagaccatagaccatccaaggaacatcaactattactc |
25812391 |
T |
|
| Q |
101 |
tagaatcaaacggactaaaattttgagatatgaccaagaaatctcttaatacacaatccgataacacacaactaaagagcacttgattcctctatacatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25812390 |
cagaatcaaacggactaaaattttgagatatgaccaagaaatctcttaatacacaatccgataacacacaactaaagagcacttgattcctctatacatg |
25812291 |
T |
|
| Q |
201 |
aaaggattaccacgacttgtatttcttaatcatttgggcgccttagatcagctcaaatatgtcctcaaatcaatgcaccttgctgccaatatttccactc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25812290 |
aaaggattaccacgacttgtatttcttaatcatttgtgcgccttagatcagctcaaatatgtcctcaaatcaatgcaccttgctgccaatatttgcactc |
25812191 |
T |
|
| Q |
301 |
ttgaagctaaagctgccctgacaaagaaatccatttattgatcgctatgacgactaaaatattgaatttttagtagtaccatgcttnnnnnnnnnntgtc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
25812190 |
ttgaagctaaagctgccctgacaaagaaatccatttattgatcgctatgacgactaaaatattgaatttttagtagtaccatgctt-aaaaaaaaatctc |
25812092 |
T |
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| Q |
401 |
ggagccacttctgggttcatactaacaaccaaggacacacgttgtggatgtgttggtagaggaatttgcgagtccatgtctctcct |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25812091 |
ggagccacttctgggttcatactaacaaccaaggacacacgttgtggatgtgttggtagaggaatttgcgagtccatgtctctcct |
25812006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 26596643 - 26596722
Alignment:
| Q |
26 |
cttaggatcttgctccaagccactaa----cgaactaccgaaagaccatagaccatccaaggaacatcaactactactct |
101 |
Q |
| |
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|||||| ||| ||||||||||||||| ||| ||||||||| ||| ||||| || ||||||||||||||||||||||| |
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| T |
26596643 |
cttagggtctcgctccaagccactaattaacgagctaccgaaaaaccgtagacaatacaaggaacatcaactactactct |
26596722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 17175 - 17487
Alignment:
| Q |
1 |
ccgaatatcagaaagaaagagacaccttaggatcttgctccaagccactaacgaactaccgaaagaccatagaccatccaaggaacatcaactactactc |
100 |
Q |
| |
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||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| ||| |||||| ||||| || ||| ||||||||||| ||||| |
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| T |
17175 |
ccgaagatcagaaagaaagagacgccttaggatcttactccaagccactaacgagttactagaagaccgtagacaatgcaaaaaacatcaactattactc |
17274 |
T |
|
| Q |
101 |
tagaatcaaacggactaaaattttgagatatgaccaagaaatctcttaatacacaatccgataacacacaactaaagagcacttgattcctctatacatg |
200 |
Q |
| |
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||||| | ||||||||| |||||||||||| ||||| ||||||| || || | ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
17275 |
tagaaccgaacggactagaattttgagatacaaccaaagaatctctcaaaacgcgatccgataacacacaactaaagagcacttgattccactatacatg |
17374 |
T |
|
| Q |
201 |
aaaggattaccacgacttgtatttcttaatcatttgggcgccttagatcagctcaaatatgtcctcaaatcaatgcaccttgctgccaatatttccactc |
300 |
Q |
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|||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17375 |
aaaggattaccacggcttgtatttctaaatcatttgtgcgccttagatcagctcaaatatgtcctcaaatcaatgcaccttgctgccaataattccactc |
17474 |
T |
|
| Q |
301 |
ttgaagctaaagc |
313 |
Q |
| |
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|||| |||||||| |
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| T |
17475 |
ttgaggctaaagc |
17487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 278
Target Start/End: Original strand, 7684068 - 7684320
Alignment:
| Q |
25 |
ccttaggatcttgctccaagccactaacgaactaccgaaagaccatagaccatccaaggaacatcaactactactctagaatcaaacggactaaaatttt |
124 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| |||||| |||| || ||||||||||||||||| | ||| ||||||| ||| || || |
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| T |
7684068 |
ccttaggatctcgctccaagccactaacgagctaccggaagaccgtagaaaatgcaaggaacatcaactac----ccggaaccaaacgggctaggatctt |
7684163 |
T |
|
| Q |
125 |
gagatatgaccaagaaatctcttaatacacaatccgataacacacaactaaagagcacttgattcctctatacatgaaaggatt---accacgacttgta |
221 |
Q |
| |
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| |||| ||||||| ||||||| |||||||||||||||| ||| ||||||| |||||| ||||||| || |||||||||| | ||| | ||||| | |
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| T |
7684164 |
gggatacgaccaaggaatctctaaatacacaatccgataccacgcaactaatgagcaccctattcctcgatgcatgaaaggaataacaccgctacttgaa |
7684263 |
T |
|
| Q |
222 |
tttcttaatcatttgggcgccttagatcagctcaaatatgtcctcaaatcaatgcac |
278 |
Q |
| |
|
||||||||||| ||| || ||||| |||||||| |||| | |||||||||| |||| |
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|
| T |
7684264 |
tttcttaatcaattgtgctccttaaatcagctcgaataggatctcaaatcaaagcac |
7684320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 32391886 - 32391792
Alignment:
| Q |
16 |
aaagagacaccttaggatcttgctccaagccactaacgaactaccgaaagaccatagaccatccaaggaacatcaactactactctagaatcaaa |
110 |
Q |
| |
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|||||||| ||||||||||| ||||||||||| |||| | |||||| || ||| ||||| || ||||||||||||||||||||||| || ||||| |
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| T |
32391886 |
aaagagactccttaggatctcgctccaagccattaacaagctaccgtaaaaccgtagacaatgcaaggaacatcaactactactctggagtcaaa |
32391792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 6984737 - 6984940
Alignment:
| Q |
1 |
ccgaatatcagaaagaaagagacaccttaggatcttgctccaagccactaacgaactaccgaaagaccatagaccatccaaggaacatcaactactactc |
100 |
Q |
| |
|
||||| ||| |||||| |||| |||||||||||| ||||||||||||||||| ||| |||||||| ||||| || |||||||||| | |||||||| |
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| T |
6984737 |
ccgaagatcggaaagatagaggaaccttaggatctcactccaagccactaacgagttactgaaagaccgtagacaatgcaaggaacattatttactactc |
6984836 |
T |
|
| Q |
101 |
tagaatcaaacggactaaaattttgagatatgaccaagaaatctcttaatacacaatccgataacacacaactaaagag--cacttgattcctctataca |
198 |
Q |
| |
|
||| |||| ||||| |||||||||||| ||||||| | ||| | || | | |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6984837 |
cagagccaaatagactagaattttgagatacgaccaaggattctttaaaaatgcgatccgataacacacaactaaagagcacacttgattcctctataca |
6984936 |
T |
|
| Q |
199 |
tgaa |
202 |
Q |
| |
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|||| |
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|
| T |
6984937 |
tgaa |
6984940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 7426184 - 7426134
Alignment:
| Q |
264 |
ctcaaatcaatgcaccttgctgccaatatttccactcttgaagctaaagct |
314 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||||||||||||||||||| |
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|
| T |
7426184 |
ctcagatcaatgcacattgctaccaatatttccactcttgaagctaaagct |
7426134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 14012628 - 14012718
Alignment:
| Q |
11 |
gaaagaaagagacaccttaggatcttgctccaagccactaacgaactaccgaaagaccatagaccatccaaggaacatcaactactactct |
101 |
Q |
| |
|
||||||||||| |||||| ||||| ||| |||||| |||| || |||||||| |||| ||||| || || ||||||||||||||||||| |
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|
| T |
14012628 |
gaaagaaagaggtaccttaagatctcgcttcaagccgctaatgagctaccgaaggaccgtagacaatgcagagaacatcaactactactct |
14012718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 5567555 - 5567680
Alignment:
| Q |
27 |
ttaggatcttgctccaagccactaacgaactaccgaaagaccatagaccatccaaggaacatcaactactactctagaatcaaacggactaaaattttga |
126 |
Q |
| |
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||||||||| | ||||| |||||||||| ||||| || || ||||| || |||||||||||| ||||||||| || ||||| ||| | ||||| | |
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| T |
5567555 |
ttaggatctcgttccaaaccactaacgagctaccagaaaactgtagacgatgcaaggaacatcatctactactccggagccaaacagacaaggattttaa |
5567654 |
T |
|
| Q |
127 |
gatatgaccaagaaatctcttaatac |
152 |
Q |
| |
|
|||| ||||||||| |||||||||| |
|
|
| T |
5567655 |
gatacaaccaagaaagctcttaatac |
5567680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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