View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15409_high_1 (Length: 723)
Name: NF15409_high_1
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15409_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 16 - 715
Target Start/End: Complemental strand, 43195063 - 43194355
Alignment:
| Q |
16 |
cagatgcatttgggcaatttgattgtcttgtactagcaaatgaagtatctatgttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttg |
115 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43195063 |
cagatgtatttgggcaatttgattgtcttgtactagcaaatgaagtatctatgttggtctcattgtagattcgtgccctaaaggttgtgcaccttgcttg |
43194964 |
T |
|
| Q |
116 |
tccaattgtgtgagcacctagtcaattaattaacacaccaaattaattatttgaaaattatgtgctcttcccaattgtgaaattatatatttgaattaaa |
215 |
Q |
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|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43194963 |
tccaattgtgtgagcacctaatcaattaattaagacaccaaattaattatttgaaaattatgtgctcttcccaattgtgaaattatatatttgaactaaa |
43194864 |
T |
|
| Q |
216 |
tataagtnnnnnnnn--cataggcttatcgtccaaatcaatgcaattgcacctgacaatgtgaccaagtccttgctagaaagaccaacagcactaaacat |
313 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43194863 |
tataagtaaaaaaaaaacataggcttatcgtccaaatcaatgcaattgcacctgacaatgtgaccaagtccttgctggaaagaccaacagcactaaacat |
43194764 |
T |
|
| Q |
314 |
tgaggtgagtgtattaaggtttgaagttggtgctgggatcgcggtgttagcagcagattgactagccgtcttggcgtctcttcttccaagttttacgttc |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43194763 |
tgaggtgagtgtattaaggtttgaagttggtgccgggattgcggtgttagcagcagattgactagccgtcttggcgtctcttcttccaagttttacgttc |
43194664 |
T |
|
| Q |
414 |
caggttgggccaccaagctatcatgtaaattaaaagaaacacgacaattgaaatattgattaattttcacttaatttacttttgcatgattatacttgca |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43194663 |
caggttgggccaccaagctatcatgtaaattaaaagaaacacgacagttgaaatattgattaattttcacttaatttacttttgcatgattacacttgca |
43194564 |
T |
|
| Q |
514 |
attgaagtattaattagattttgattatttgagtaattaat-------tatatgactacacttacgattgcaacggagtccgcggccgcaatggcaagga |
606 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
43194563 |
attgaagtattaattagattttgattgtttgagtaattaattcattgatatatgactacacttacgattgcaacggagtccgcggcagcgatggcaagga |
43194464 |
T |
|
| Q |
607 |
tatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtcaatgacatcaaatccacgagcagagtttctattcgggtttgc |
706 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43194463 |
tatcagcacatgatacaacgccaggacatacattctctacggctgtcttaatgttgtcaatgacatcaaatccacgagcagagtttctattcggatttgc |
43194364 |
T |
|
| Q |
707 |
gttcttctc |
715 |
Q |
| |
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||| ||||| |
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|
| T |
43194363 |
gtttttctc |
43194355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 24 - 202
Target Start/End: Complemental strand, 43190025 - 43189847
Alignment:
| Q |
24 |
tttgggcaatttgattgtcttgtactagcaaatgaagtatctatgttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtccaattg |
123 |
Q |
| |
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||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |
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| T |
43190025 |
tttgggcaattagattgccttgtgctagcaaaagaagtatctatgttggtctcattgtagattcgtaccctaaatgttgtgcaccttgcttgtccaattg |
43189926 |
T |
|
| Q |
124 |
tgtgagcacctagtcaattaattaacacaccaaattaattatttgaaaattatgtgctcttcccaattgtgaaattata |
202 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||||||| |||||| | |||||||| ||| ||||||||| |
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|
| T |
43189925 |
tgtgagcacctagtcaattaattaagacaccaaattagttatttgacaattattagttcttcccagttgagaaattata |
43189847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 263 - 433
Target Start/End: Complemental strand, 43180467 - 43180297
Alignment:
| Q |
263 |
acctgacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgctgggatcgcggtgtta |
362 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||| |
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| T |
43180467 |
acctgacaatgtgaccaaatctttgctagaaagaccaacggcgctaaacattgaggtgagtgtattgaggttggaagttggtgccgggatggcagtgtta |
43180368 |
T |
|
| Q |
363 |
gcagcagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagcta |
433 |
Q |
| |
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||||| |||||||||||||| || || |||||||||||||||||||| ||||||||||| || |||||||| |
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|
| T |
43180367 |
gcagcggattgactagccgttttagcatctcttcttccaagttttacattccaggttggacctccaagcta |
43180297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 251 - 449
Target Start/End: Complemental strand, 43189331 - 43189133
Alignment:
| Q |
251 |
caatgcaattgcacctgacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgctggg |
350 |
Q |
| |
|
||||| ||||| ||||||||||| ||| ||||||||| | |||||||||||| ||||||||||||||||| |||||||||| ||||||||| |||| |
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|
| T |
43189331 |
caatggaattgtacctgacaatgcgactaagtccttggtggaaagaccaacattcttaaacattgaggtgagtatattaaggttggaagttggtcttggg |
43189232 |
T |
|
| Q |
351 |
atcgcggtgttagcagcagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagctatcatgtaaattaaaag |
449 |
Q |
| |
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|| || ||||| ||| ||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43189231 |
atggcagtgttcgcatcagattgactagcagttgtggcatctcttcttccaagttttacattccaggttgggccaccaagctatcatgtaaattaaaag |
43189133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 565 - 717
Target Start/End: Complemental strand, 43180222 - 43180070
Alignment:
| Q |
565 |
cacttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtc |
664 |
Q |
| |
|
||||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| || || ||||| |||||||| |||||||| |||||||| |
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| T |
43180222 |
cacttacaattgcaacagagtctgcggcagcaatggctaggatatcagcacatgatacaactccggggcatacgttctctacggctgtctttatgttgtc |
43180123 |
T |
|
| Q |
665 |
aatgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctcac |
717 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| || ||||| |||||||||| |
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|
| T |
43180122 |
gatgacatcaaatccacgagcggagtttctatttggatttgcattcttctcac |
43180070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 43180706 - 43180559
Alignment:
| Q |
18 |
gatgcatttgggcaatttgattgtcttgtactagcaaatgaagtatctatgttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtc |
117 |
Q |
| |
|
||||| ||||||||||||||||| || || |||||||||| || || |||||||||||| |||||||||||||||||||| |||| || |||||||||| |
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|
| T |
43180706 |
gatgcctttgggcaatttgattgcctcgtgctagcaaatgcagcatttatgttggtctcgttgtagattcgtgccctaaaatttgtacaccttgcttgtc |
43180607 |
T |
|
| Q |
118 |
caattgtgtgagcacctagtcaattaattaacacaccaaattaattat |
165 |
Q |
| |
|
|||||||||| |||||| |||||||||||| || ||||||||||||| |
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|
| T |
43180606 |
caattgtgtgtgcacctgttcaattaattaagactccaaattaattat |
43180559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 566 - 715
Target Start/End: Complemental strand, 43189050 - 43188901
Alignment:
| Q |
566 |
acttacgattgcaacggagtccgcggccgcaatggcaaggatatcagcacatgatacaacgccaggacatacattctctacagctgtcttaatgttgtca |
665 |
Q |
| |
|
|||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||| || || ||||| |||||||| || ||||| ||||||||| |
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|
| T |
43189050 |
acttacaattgcaacggagtctgtggcagcaatggcaaggatatcagcacatgatacaactccggggcatacgttctctaccgccgtctttatgttgtca |
43188951 |
T |
|
| Q |
666 |
atgacatcaaatccacgagcagagtttctattcgggtttgcgttcttctc |
715 |
Q |
| |
|
|||||||| ||||| ||| ||||||| |||||||| |||||||||||| |
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|
| T |
43188950 |
atgacatcgaatcctcgaacagagttcttattcgggagtgcgttcttctc |
43188901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 267 - 432
Target Start/End: Complemental strand, 36190800 - 36190635
Alignment:
| Q |
267 |
gacaatgtgaccaagtccttgctagaaagaccaacagcactaaacattgaggtgagtgtattaaggtttgaagttggtgctgggatcgcggtgttagcag |
366 |
Q |
| |
|
||||||| |||||| |||||| | |||||||||| |||| ||||| ||||| ||||| || ||| ||||||| ||||||||||| | |||| |||| |
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|
| T |
36190800 |
gacaatgcgaccaaatccttggtggaaagaccaagagcattaaaccttgagatgagttggttgaggcttgaagtgggtgctgggatgtcattgtttgcag |
36190701 |
T |
|
| Q |
367 |
cagattgactagccgtcttggcgtctcttcttccaagttttacgttccaggttgggccaccaagct |
432 |
Q |
| |
|
| |||| |||||| || | || ||||||||||||||||| || | ||| |||||||| ||||||| |
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|
| T |
36190700 |
ctgatttactagctgttcttgcatctcttcttccaagtttcacatcccatgttgggcctccaagct |
36190635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 36191099 - 36190996
Alignment:
| Q |
35 |
tgattgtcttgtactagcaaatgaagtatctatgttggtctcattgtagattcgtgccctaaaggttgtgcatcttgcttgtccaattgtgtgagcacct |
134 |
Q |
| |
|
|||||| ||||| | |||||| |||||||||||||||| || ||||| || | || ||||| || ||||| ||||||||||||||||||||| | ||| |
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|
| T |
36191099 |
tgattgccttgtgcgagcaaaggaagtatctatgttggagtcgttgtaaatgtgggctctaaatgtagtgcaccttgcttgtccaattgtgtgaccccct |
36191000 |
T |
|
| Q |
135 |
agtc |
138 |
Q |
| |
|
|||| |
|
|
| T |
36190999 |
agtc |
36190996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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