View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15409_high_4 (Length: 267)
Name: NF15409_high_4
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15409_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 22830616 - 22830686
Alignment:
| Q |
66 |
ctatctctgaaaattcctccacaagaggagagattaccatttgtgaatccatctgtattgcatttgatcca |
136 |
Q |
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| T |
22830616 |
ctatctctaaaaattcctccacaaaaggagaggttgccatttgtggatccatcggtgttgcatttgatcca |
22830686 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 36726651 - 36726691
Alignment:
| Q |
19 |
ttcccaaacatgtattttcaccaaagcaaagtagaaaatcc |
59 |
Q |
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| T |
36726651 |
ttcccaaacctgtattttcaccaaagcaaagtagaaaatcc |
36726691 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 23881498 - 23881422
Alignment:
| Q |
33 |
ttttcaccaaagcaaagtagaaaatccgatttactatctctgaaaattcctccacaagaggagagattaccatttgt |
109 |
Q |
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| T |
23881498 |
ttttctccaaagcaaagcaaaaaatccgaattactatctctgaagattcccccacaggaagattgattactatttgt |
23881422 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 17688986 - 17688922
Alignment:
| Q |
66 |
ctatctctgaaaattcctccacaagagga-gagattaccatttgtgaatccatctgtattgcattt |
130 |
Q |
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| T |
17688986 |
ctatctctgaaaatccctccacatgaggatgaga-taccatttgtggagccatcagtattgcattt |
17688922 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 23113741 - 23113677
Alignment:
| Q |
66 |
ctatctctgaaaattcctccacaagagga-gagattaccatttgtgaatccatctgtattgcattt |
130 |
Q |
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| T |
23113741 |
ctatctctgaaaatccctccacatgaggatgaga-taccatttgtggagccatcagtattgcattt |
23113677 |
T |
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