View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15409_high_9 (Length: 235)

Name: NF15409_high_9
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15409_high_9
NF15409_high_9
[»] chr3 (16 HSPs)
chr3 (62-171)||(46354017-46354130)
chr3 (78-171)||(52945587-52945683)
chr3 (79-171)||(8351071-8351166)
chr3 (79-171)||(8674555-8674650)
chr3 (79-171)||(45408265-45408360)
chr3 (78-171)||(54253841-54253937)
chr3 (78-157)||(3283332-3283414)
chr3 (9-45)||(46353940-46353976)
chr3 (79-170)||(54160407-54160501)
chr3 (76-169)||(35180589-35180685)
chr3 (128-169)||(19228634-19228675)
chr3 (79-171)||(19855483-19855578)
chr3 (128-171)||(39328483-39328526)
chr3 (128-171)||(50090876-50090919)
chr3 (128-171)||(53518915-53518958)
chr3 (79-171)||(20513077-20513172)
[»] chr6 (2 HSPs)
chr6 (79-169)||(10075011-10075104)
chr6 (128-158)||(32645710-32645740)
[»] chr5 (8 HSPs)
chr5 (78-171)||(28038249-28038345)
chr5 (78-171)||(15978820-15978916)
chr5 (79-171)||(37172437-37172532)
chr5 (82-171)||(38293523-38293616)
chr5 (78-171)||(9741743-9741839)
chr5 (79-171)||(20269252-20269347)
chr5 (79-171)||(23204395-23204490)
chr5 (78-171)||(38758666-38758761)
[»] chr7 (5 HSPs)
chr7 (79-171)||(5995095-5995190)
chr7 (82-171)||(24611437-24611529)
chr7 (78-171)||(3961194-3961290)
chr7 (128-171)||(41585921-41585964)
chr7 (74-143)||(36343016-36343088)
[»] chr1 (9 HSPs)
chr1 (78-158)||(5226817-5226900)
chr1 (76-171)||(25671020-25671118)
chr1 (79-171)||(43939495-43939590)
chr1 (78-157)||(1838718-1838800)
chr1 (78-169)||(42470774-42470868)
chr1 (79-171)||(24992908-24993003)
chr1 (79-146)||(30289032-30289102)
chr1 (79-120)||(25825395-25825436)
chr1 (78-169)||(26213744-26213838)
[»] chr4 (10 HSPs)
chr4 (81-171)||(51702477-51702570)
chr4 (82-171)||(16467203-16467295)
chr4 (79-171)||(32090009-32090104)
chr4 (79-171)||(28755403-28755501)
chr4 (79-171)||(32626108-32626203)
chr4 (79-171)||(51682605-51682700)
chr4 (78-157)||(13387001-13387083)
chr4 (89-171)||(32868013-32868098)
chr4 (79-171)||(42434275-42434370)
chr4 (79-171)||(33117532-33117627)
[»] chr8 (13 HSPs)
chr8 (78-171)||(9479432-9479528)
chr8 (78-171)||(26912365-26912461)
chr8 (78-171)||(28539181-28539277)
chr8 (79-171)||(16930847-16930942)
chr8 (78-157)||(1983535-1983617)
chr8 (80-171)||(40067595-40067689)
chr8 (79-157)||(10078323-10078404)
chr8 (82-170)||(14916706-14916797)
chr8 (79-171)||(23472533-23472627)
chr8 (128-171)||(9478782-9478825)
chr8 (128-171)||(22812365-22812408)
chr8 (79-171)||(30774144-30774239)
chr8 (119-171)||(14041392-14041444)
[»] scaffold0004 (1 HSPs)
scaffold0004 (78-171)||(121676-121772)
[»] scaffold0006 (1 HSPs)
scaffold0006 (78-169)||(231174-231268)
[»] scaffold0009 (1 HSPs)
scaffold0009 (79-171)||(49839-49933)
[»] chr2 (6 HSPs)
chr2 (79-157)||(9548264-9548345)
chr2 (78-171)||(1749958-1750054)
chr2 (78-171)||(10664731-10664827)
chr2 (90-171)||(12725757-12725841)
chr2 (79-171)||(24314233-24314328)
chr2 (127-171)||(2969688-2969732)
[»] scaffold0093 (1 HSPs)
scaffold0093 (79-171)||(9170-9264)
[»] scaffold0002 (1 HSPs)
scaffold0002 (79-171)||(478328-478423)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 46354017 - 46354130
Alignment:
Q  62 catttttgtcataaatattttatgaaagtgtcttttaacaagttattttatgagtattt----aaaaagtaccaactaatttttatgaaagtgtctttta 157  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||    |||||  ||||||||||||||||||||||||||||||    
T  46354017 catttttgccagaaatattttatgaaagtgtcttttaacaagttattttataagtatttgttaaaaaaacaccaactaatttttatgaaagtgtctttta 46354116  T
Q  158 ataaaattataact 171  Q
    ||||||||||||||    
T  46354117 ataaaattataact 46354130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 52945587 - 52945683
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||||||||||||||| |||||||||  ||||| ||||   |||| | ||||||||||||||||||| ||||||||||  ||| ||||||||    
T  52945587 attttatgaaagtgtcttttagcaagttattcaatgagcatttggtaaaaggcaccaactaatttttatgaaggtgtcttttagcaaagttataact 52945683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 8351071 - 8351166
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  8351071 ttttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaatgtgtcttttaacaaagttataact 8351166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 8674555 - 8674650
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||||||||||||| |||||||||||||||| ||||   ||||   ||||||| ||||||||||| ||||||||||  ||| ||||||||    
T  8674555 ttttatgaaagtgtcttttagcaagttattttatgagcatttgctaaaacagaccaactgatttttatgaaggtgtcttttagcaaagttataact 8674650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 45408265 - 45408360
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtatt---taaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||||||||||||| ||||||||| |||||| |||   |||||   || |||||||||||||||| ||||||||||  ||||||||||||    
T  45408265 ttttatgaaagtgtcttttagcaagttattctatgagcatttgctaaaagacacaaactaatttttatgaaggtgtcttttaccaaaattataact 45408360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 54253937 - 54253841
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||| |||| ||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  54253937 attttatgaaggtgtattttagcaagttattctatgagcatttcctaaaagacaccaactaatttttatgaaggtgtcttttaacaaagttataact 54253841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 3283414 - 3283332
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtctttta 157  Q
    |||||||||| |||||||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||    
T  3283414 attttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtctttta 3283332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 46353940 - 46353976
Alignment:
Q  9 gaagaatattatttaaatgtcaagctaaaattgaagt 45  Q
    |||||||||||||||||||||||||||||||||||||    
T  46353940 gaagaatattatttaaatgtcaagctaaaattgaagt 46353976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 54160407 - 54160501
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataac 170  Q
    ||||||||| |||||||||| ||||||||| ||| || ||||   ||||   ||||||||||||||||||| ||||||||||| ||| |||||||    
T  54160407 ttttatgaaggtgtcttttagcaagttattctataagcatttgttaaaagacaccaactaatttttatgaaggtgtcttttaacaaagttataac 54160501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 169
Target Start/End: Original strand, 35180589 - 35180685
Alignment:
Q  76 atattttatgaaagtgtcttttaacaagttattttatgagtat---ttaaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataa 169  Q
    |||||||||||| ||||||||||| |||||||||||| || ||   ||||||   | ||| |||||||||||||| |||||||||| ||| ||||||    
T  35180589 atattttatgaaggtgtcttttaaaaagttattttattagcatttgttaaaatacatcaattaatttttatgaaattgtcttttaacaaagttataa 35180685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 19228634 - 19228675
Alignment:
Q  128 accaactaatttttatgaaagtgtcttttaataaaattataa 169  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  19228634 accaactaatttttatgaaggtgtcttttaacaaaattataa 19228675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 19855483 - 19855578
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||| ||| ||||||||| || ||| ||||   ||||   ||||||||||||||||||| ||||||||||  ||||||||||||    
T  19855483 ttttatgaaggtgtctattagcaagttattctacgagcatttgctaaaagacaccaactaatttttatgaaggtgtcttttagcaaaattataact 19855578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 39328483 - 39328526
Alignment:
Q  128 accaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||    
T  39328483 accaactaatttttatgaaagtgtcttttagcaaagttataact 39328526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 50090919 - 50090876
Alignment:
Q  128 accaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||||||||||||||||| |||||  ||||||||||||    
T  50090919 accaactaatttttatgaaagtgttttttagcaaaattataact 50090876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 53518958 - 53518915
Alignment:
Q  128 accaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||    
T  53518958 accaattaatttttatgaaagtgtcttttaacaaagttataact 53518915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 20513172 - 20513077
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||| ||| ||||| |||||| ||||   ||||   ||||| ||||||||||||| |||| |||||| ||| ||||||||    
T  20513172 ttttatgaaggtgtcttttagcaatttattctatgagcatttgttaaaagacaccaattaatttttatgaaggtgttttttaacaaagttataact 20513077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 10075011 - 10075104
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataa 169  Q
    |||||||||||||||||||||||||||||||||||| |||||   ||||   ||||||||||||||||||| ||||||||||| ||| ||||||    
T  10075011 ttttatgaaagtgtcttttaacaagttattttatgaatatttgttaaaagacaccaactaatttttatgaaggtgtcttttaacaaagttataa 10075104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 158
Target Start/End: Original strand, 32645710 - 32645740
Alignment:
Q  128 accaactaatttttatgaaagtgtcttttaa 158  Q
    |||||||||||||||||||||||||||||||    
T  32645710 accaactaatttttatgaaagtgtcttttaa 32645740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 28038345 - 28038249
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| |||||||||| |||| ||||||||    
T  28038345 attttatgaaagtgtcttttagcaagttattctatgagcatttgctaaaacacaccaactaatttttatgaaggtgtcttttagtaaagttataact 28038249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 15978820 - 15978916
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||| |||||||||| ||| ||| | |||||||||||   ||||   |||||||||||||||| |||||||||||||| ||||||||||||    
T  15978820 attttatgaaggtgtcttttagcaaattaatctatgagtatttgctaaaagacaccaactaatttttataaaagtgtcttttaacaaaattataact 15978916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 37172532 - 37172437
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||||||||||||| || ||| ||||   ||||   ||||||||||||||||||| ||||||||||  ||||||||||||    
T  37172532 ttttatgaaggtgtcttttaacaagttattctacgagcatttgctaaaagacaccaactaatttttatgaaggtgtcttttagaaaaattataact 37172437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 38293616 - 38293523
Alignment:
Q  82 tatgaaagtgtcttttaacaagttattttatgagtattt----aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||| |||||||||||||||||||| |||||| ||||    ||||   ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  38293616 tatgaaggtgtcttttaacaagttattctatgagcattttattaaaagacaccaactaatttttatgaacgtgtcttttaacaaagttataact 38293523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 9741743 - 9741839
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtatt---taaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||| |||||||||||||| ||||| |||||| |||   ||||||  ||||||||||||||||||| |||| |||||  ||| ||||||||    
T  9741743 attttatgaaggtgtcttttaacaaattattctatgagcatttgctaaaaaacaccaactaatttttatgaaggtgttttttagcaaagttataact 9741839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 20269252 - 20269347
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||| ||||||||| |||||  ||||   ||||   | ||| ||||||||||||| ||||||||||||||||||||||||    
T  20269252 ttttatgaaggtgtcttttagcaagttattctatgaacatttgctaaaagacaacaattaatttttatgaaggtgtcttttaataaaattataact 20269347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 23204395 - 23204490
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtat---ttaaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||||||||||||| |||||| ||   ||||||   | ||||||||||||||||| ||||||||||  ||| ||||||||    
T  23204395 ttttatgaaggtgtcttttaacaagttattctatgagcatttgttaaaagacatcaactaatttttatgaaggtgtcttttagcaaagttataact 23204490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 38758761 - 38758666
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtatt--taaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||| |||||||||| ||||||||| |||||| |||  |||||   ||||||| |||||||| || ||||||||||| ||| ||||||||    
T  38758761 attttatgaaggtgtcttttagcaagttattctatgagcattgctaaaagacaccaactgatttttataaaggtgtcttttaacaaagttataact 38758666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 5995190 - 5995095
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||||||||||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||  ||||||||||||    
T  5995190 ttttatgaaagtgtcttttagcaagttattatatgagcatttgctaaaagacaccaactaatttttatgaaggtgtcttttagcaaaattataact 5995095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 24611437 - 24611529
Alignment:
Q  82 tatgaaagtgtcttttaacaagttattttatgagtattta--aaaag-taccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||| |||||||||| ||||||||| | |||| |||||  ||||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  24611437 tatgaaggtgtcttttagcaagttattctctgagcatttattaaaagataccaactaatttttatgaaagtgtcttttaacaaagttataact 24611529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 3961194 - 3961290
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtat---ttaaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||||||||||||||| ||||||||| |||||  ||   ||||||   |||||||||||||||| || |||| |||||  ||||||||||||    
T  3961194 attttatgaaagtgtcttttagcaagttattctatgatcatttgttaaaagacaccaactaatttttattaaggtgttttttagcaaaattataact 3961290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 41585964 - 41585921
Alignment:
Q  128 accaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||    
T  41585964 accaactaatttttatgaaggtgtcttttagcaaaattataact 41585921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Original strand, 36343016 - 36343088
Alignment:
Q  74 aaatattttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttat 143  Q
    ||||||||||||||  ||| |||||||||||||||||||||| ||||   ||||   ||||||||||||||||    
T  36343016 aaatattttatgaagatgttttttaacaagttattttatgagcatttgttaaaagacaccaactaatttttat 36343088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 5226817 - 5226900
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtat---ttaaaaagtaccaactaatttttatgaaagtgtcttttaa 158  Q
    |||||||||| |||||||||||||||||||| |||||||||   |||||||  ||||||||||||||||||| |||| ||||||    
T  5226817 attttatgaaggtgtcttttaacaagttattatatgagtatttgttaaaaaacaccaactaatttttatgaaggtgtgttttaa 5226900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 25671118 - 25671020
Alignment:
Q  76 atattttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||||| |||||||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  25671118 atattttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtcttttaacaaagttataact 25671020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 43939590 - 43939495
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||| ||||||||| |||||| ||||   ||||   ||||| ||||||||||||| ||||||||||| ||||||||||||    
T  43939590 ttttatgaaggtgtcttttagcaagttattctatgagcatttgttaaaagacaccaattaatttttatgaaggtgtcttttaacaaaattataact 43939495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 1838800 - 1838718
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtctttta 157  Q
    |||||||||||||||||||||  |||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||    
T  1838800 attttatgaaagtgtcttttagtaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtctttta 1838718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 42470774 - 42470868
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataa 169  Q
    ||||||||||  |||  |||||||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||| ||||||||||    
T  42470774 attttatgaagatgtgctttaacaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtcttttaacaaaattataa 42470868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 24993003 - 24992908
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||| ||| ||||| ||| || ||||   ||||   ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  24993003 ttttatgaaggtgtcttttagcaaattattatattagcatttgttaaaagacaccaactaatttttatgaaggtgtcttttaacaaagttataact 24992908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 30289102 - 30289032
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtat---ttaaaaagtaccaactaatttttatgaa 146  Q
    ||||||||| | |||||||||||||||||||||||| |||   |||||| | |||||||| ||||||||||    
T  30289102 ttttatgaaggcgtcttttaacaagttattttatgaatatttgttaaaaggcaccaactattttttatgaa 30289032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 25825436 - 25825395
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt 120  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  25825436 ttttatgaaggtgtcttttagcaagttattttatgagcattt 25825395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 26213838 - 26213744
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataa 169  Q
    |||||| ||| |||||||||| ||||||||| |||||| ||||   |||||  | |||||||| ||||| || ||||||||||| ||| ||||||    
T  26213838 attttacgaaggtgtcttttagcaagttattctatgagcatttgttaaaaaacatcaactaatatttataaatgtgtcttttaacaaagttataa 26213744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 51702477 - 51702570
Alignment:
Q  81 ttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||||||||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  51702477 ttatgaaagtgtcttttagcaagttattctatgagcatttgctaaaagaaaccaactaatttttatgaaggtgtcttttaacaaagttataact 51702570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 16467295 - 16467203
Alignment:
Q  82 tatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||| |||||||||||||||||||| |||||  ||||   |||||| ||||||||||||||||||| || |||||||| ||| ||||||||    
T  16467295 tatgaaggtgtcttttaacaagttattatatgaacatttgttaaaaagcaccaactaatttttatgaaggtatcttttaacaaagttataact 16467203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 32090104 - 32090009
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||| ||||||||||||| || ||||   ||||   ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  32090104 ttttatgaaggtgtcttttagcaagttattttattagcatttgttaaaagacaccaactaatttttatgaatgtgtcttttaacaaagttataact 32090009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 28755403 - 28755501
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttatt---ttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| ||||||||||||||||||||   ||||||| ||||   ||||   ||||| |||||||||||||  |||||||||||||||||||||||    
T  28755403 ttttatgaaggtgtcttttaacaagttattattttatgagcatttgttaaaagacaccaattaatttttatgaagttgtcttttaataaaattataact 28755501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 32626203 - 32626108
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||| ||||||||| |||||| ||||   ||||   |||||||||||||||||||  |||||||||  ||| ||||||||    
T  32626203 ttttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaagttgtcttttagcaaagttataact 32626108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 51682700 - 51682605
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||| ||||| ||||||||| |||||  ||||   ||||   ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  51682700 ttttatgaaggtgttttttagcaagttattctatgaacatttgttaaaagacaccaactaatttttatgaaggtgtcttttaacaaagttataact 51682605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 157
Target Start/End: Original strand, 13387001 - 13387083
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtctttta 157  Q
    ||||||| || |||||||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||    
T  13387001 attttataaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtctttta 13387083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 32868013 - 32868098
Alignment:
Q  89 gtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||||||||||||| |||||| ||||   ||||   ||||||||||||||||||| |||| |||||  ||| ||||||||    
T  32868013 gtgtcttttaacaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtgttttagcaaagttataact 32868098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 42434370 - 42434275
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||| ||| |||| ||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||  ||| ||||||||    
T  42434370 ttttaggaaggtgttttttagcaagttattctatgagcatttgttaaaagacaccaactaatttttatgaaggtgtcttttagcaaagttataact 42434275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 33117532 - 33117627
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattta--aaaagt-accaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||| ||||| |||| |||| |||||  ||||   |||||| |||||||||||||||| || ||||||||||| ||| ||||||||    
T  33117532 ttttatgaaggtgtattttagcaagatattctatgatcatttgctaaaagtcaccaactaatttttataaaggtgtcttttaacaaagttataact 33117627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 9479432 - 9479528
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||| |||||||||| ||||||||| |||||| ||||   ||||   || |||||||||||||||||||||||||||| ||| ||||||||    
T  9479432 attttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacacaaactaatttttatgaaagtgtcttttaacaaagttataact 9479528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 26912461 - 26912365
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||| |||||||||||||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||  ||| ||||||||    
T  26912461 attttatgaatgtgtcttttaacaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtcttttagcaaagttataact 26912365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 171
Target Start/End: Original strand, 28539181 - 28539277
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||||  ||||||||| |||||||||||||||| ||||   ||||  |||||||||||||||||||| ||||||||||  ||| ||||||||    
T  28539181 attttatgaatatgtcttttagcaagttattttatgagcatttgttaaaagataccaactaatttttatgaaggtgtcttttagcaaagttataact 28539277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 171
Target Start/End: Complemental strand, 16930942 - 16930847
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||| ||||||||| |||||| ||||   ||||   |||||||||||||||||||||||| |||||  ||| ||||||||    
T  16930942 ttttatgaaggtgtcttttagcaagttattctatgagcattttttaaaagacaccaactaatttttatgaaagtgttttttagcaaagttataact 16930847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 1983617 - 1983535
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtat---ttaaaaagtaccaactaatttttatgaaagtgtctttta 157  Q
    |||||||||| |||||||||||||| ||||| ||| |  ||   ||||||| || ||||||||||||||||||||||||||||    
T  1983617 attttatgaaggtgtcttttaacaaattattctataaaaatttgttaaaaaatatcaactaatttttatgaaagtgtctttta 1983535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 40067689 - 40067595
Alignment:
Q  80 tttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||| |||||||||| ||||||||| ||| | |||||   ||||   ||||||||||||||||||| |||| |||||| ||||||||||||    
T  40067689 tttatgaatgtgtcttttagcaagttattctataaatatttgttaaaagacaccaactaatttttatgaaggtgtattttaacaaaattataact 40067595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 10078323 - 10078404
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtctttta 157  Q
    ||||||||| |||||||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||    
T  10078323 ttttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtctttta 10078404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 14916797 - 14916706
Alignment:
Q  82 tatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataac 170  Q
    |||||| |||| ||||| ||||||||| |||||| ||||   ||||  |||||||||||||||||||| || |||||||| ||| |||||||    
T  14916797 tatgaatgtgttttttagcaagttattctatgagcatttgctaaaagataccaactaatttttatgaaggtatcttttaacaaagttataac 14916706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 23472533 - 23472627
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||||||||| || |||||| |||||| ||||   ||||  |||||||||||||||||||| ||||||||||  ||| ||||||||    
T  23472533 ttttatgaaggtgtcttttagca-gttattctatgaggatttgctaaaagataccaactaatttttatgaaggtgtcttttagcaaagttataact 23472627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 9478782 - 9478825
Alignment:
Q  128 accaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  9478782 accaactaatttttatgaaggtgtcttttaacaaagttataact 9478825  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 22812408 - 22812365
Alignment:
Q  128 accaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  22812408 accaactaatttttatgaaggtgtcttttaacaaagttataact 22812365  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 30774144 - 30774239
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||| ||||| ||||||||| |||||| ||||   ||||  |||||||||||||||||||| || || ||||| |||  |||||||    
T  30774144 ttttatgaaggtgttttttagcaagttattctatgagcatttgctaaaagataccaactaatttttatgaaggtatcctttaacaaaggtataact 30774239  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 14041392 - 14041444
Alignment:
Q  119 ttaaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||  ||||| ||||||||||||| ||||||||||| ||| ||||||||    
T  14041392 ttaaaaaacaccaattaatttttatgaaggtgtcttttaacaaagttataact 14041444  T

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Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 121772 - 121676
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||| |||||||||||||||||||| |||||| ||||   ||||   ||||| ||||||||||||| | ||||||||  ||||||||||||    
T  121772 attttatgaaggtgtcttttaacaagttattctatgagcatttgctaaaagacaccaattaatttttatgaatgagtcttttagcaaaattataact 121676  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 231268 - 231174
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataa 169  Q
    |||||||||| |||||||||||||| ||||| |||||  ||||   ||||  |||||||||||||||||||| ||||||| ||| ||| ||||||    
T  231268 attttatgaaggtgtcttttaacaaattattctatgaacatttgttaaaagataccaactaatttttatgaaggtgtcttataacaaagttataa 231174  T

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Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 49839 - 49933
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattta--aaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| || ||||||| |||||||||||||||  ||||   |||| |||||| |||||||||| || ||||||||||| ||| ||||||||    
T  49839 ttttatgaatgtatcttttagcaagttattttatgaacatttgttaaaaataccaattaatttttataaatgtgtcttttaacaaagttataact 49933  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 9548345 - 9548264
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtctttta 157  Q
    ||||||||| |||||||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| ||||||||||    
T  9548345 ttttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggtgtctttta 9548264  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 1750054 - 1749958
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||| |||||||||| || |||||| ||| || ||||   ||||   ||||||||||||||||||| ||||||||||  ||||||||||||    
T  1750054 attttatgaaggtgtcttttagcaggttattctattagcatttgttaaaagacaccaactaatttttatgaaggtgtcttttagcaaaattataact 1749958  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 10664827 - 10664731
Alignment:
Q  78 attttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||| |||||||||| ||||||||| |||||| ||||   ||||   ||||||||||||||||||| | ||||||||  ||| ||||||||    
T  10664827 attttatgaaggtgtcttttagcaagttattctatgagcatttgctaaaagacaccaactaatttttatgaaggcgtcttttagcaaagttataact 10664731  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 12725841 - 12725757
Alignment:
Q  90 tgtcttttaacaagttattttatgagtattta--aaaagt-accaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| ||||||||| |||||| |||||  |||||  ||||||||||||||||||| ||||||||||  ||| ||||||||    
T  12725841 tgtcttttagcaagttattctatgagcatttactaaaagacaccaactaatttttatgaaggtgtcttttagcaaagttataact 12725757  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 24314233 - 24314328
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||| || |||||||||| ||| |||||||||||| ||||   ||||   ||||||||||||||||||| ||||||||||  ||| ||||||||    
T  24314233 ttttataaaggtgtcttttagcaaattattttatgagcatttgttaaaagacaccaactaatttttatgaaggtgtcttttagcaaagttataact 24314328  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 2969732 - 2969688
Alignment:
Q  127 taccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    |||||||||||||||||||| ||||||||||  ||| ||||||||    
T  2969732 taccaactaatttttatgaaggtgtcttttagcaaagttataact 2969688  T

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Target: scaffold0093 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 9170 - 9264
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||| ||||| ||||||||| |||||| ||||   ||||  |||||||||||||| ||||| ||||||||||  ||||||||||||    
T  9170 ttttatgaaggtgtattttagcaagttattctatgagcatttgctaaaagataccaactaatttt-atgaaggtgtcttttagcaaaattataact 9264  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 478328 - 478423
Alignment:
Q  79 ttttatgaaagtgtcttttaacaagttattttatgagtattt---aaaaagtaccaactaatttttatgaaagtgtcttttaataaaattataact 171  Q
    ||||||||| |||| ||||| ||||||||| |||||  ||||   ||||   ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  478328 ttttatgaaggtgttttttagcaagttattctatgaacatttgttaaaagacaccaactaatttttatgaaggtgtcttttaacaaagttataact 478423  T

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