View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15409_low_1 (Length: 837)
Name: NF15409_low_1
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15409_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Original strand, 53942069 - 53942572
Alignment:
| Q |
16 |
caacatcagaagaagttacaagtttcgatatgaaatctgcacattggttcccattaattttttaagtgtatgagaaaccgtaatgttactttgaaggtgc |
115 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53942069 |
caacatcagaagaagctacaagtttcgacatgaaatctgcacattggttccccttaattctttaagtgtatgagaaaccgtaatgttactttgaaggtgc |
53942168 |
T |
|
| Q |
116 |
aaatattttatgtcttaaataagaaccacatagatatggtaacagtcaatggggtcattaatcaaattaatgcaaacaggataatctgaaccatgataga |
215 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53942169 |
aaatgttttatgtcttaaataagaaccacatagatatggtaaccgtcaatggggtcattaatcaaattaatgcaaacaggataatctgaaccatgataga |
53942268 |
T |
|
| Q |
216 |
tagnnnnnnnnctcagcaaagcaagatatcat---------aaatataccttgaaaaaccggcaagaaacaaactagaattatagcaggagtaccaccct |
306 |
Q |
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| T |
53942269 |
tagaaaaaaa-ctcagcaa-gcaagatatcatctgaacctaaaatataccttgaaaaaccggcaagaaacaaactagaattatagcaggagtaccaccct |
53942366 |
T |
|
| Q |
307 |
actctactaggaagtagtagtaaataagaagaaagggtgaatgaaaaattaatttagtgtgaatagtgaggatacaccattggataagtcaaacttgcac |
406 |
Q |
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| T |
53942367 |
actctactaggaagtagtagtaaataagaagaaagggtgaatgaaaaattaatttagtgtcaatagtgaggatacaccattggataagtcaaacttgcac |
53942466 |
T |
|
| Q |
407 |
acaacgatcattccaatggttagaaatcattctctaccatgaccacattaaggtgtcccactatagaaacaagttgttatgaaatctaaaaactgaattc |
506 |
Q |
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| T |
53942467 |
acatcgatcattccaatggttagaaatcattctctaccatgaccacattaaggtgtcccactatagaaacaagttgttatgaaatctaaaaactgaattc |
53942566 |
T |
|
| Q |
507 |
tcttgt |
512 |
Q |
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|||||| |
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| T |
53942567 |
tcttgt |
53942572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 542 - 828
Target Start/End: Original strand, 53942581 - 53942867
Alignment:
| Q |
542 |
tgattgtttcaccaaatagaaacaaagacacttatcgaaaacaagaacaagaagcagatgcagccacgaaaacaacaacaaaaatgacaatcctttcttc |
641 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
53942581 |
tgatagtttcaccaaatagaaacaaagacacttatcgaaaacaagaacaagaagcagatgcagccacgaacacaacaacaaaaatgacaatcctttcttc |
53942680 |
T |
|
| Q |
642 |
actctgttcttttcctccaattcattcatcttatccatttccaaattctgcattaacatgttcaacttctaaccttagaactcaaatccaatcctatgct |
741 |
Q |
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| T |
53942681 |
actctgttcttttcctccaattcattcatcttatccatttccaaattctgcattaacatgttcaatttctaaccttagaactcaaatccaatcctatgct |
53942780 |
T |
|
| Q |
742 |
tgttccacaaacatttgcacccaaaaaatcgacacctctttgatcacaatcgctgaatctttctacgacgatgaattctgtgctgct |
828 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
53942781 |
tgttccacaaacatttgcacccaaaaaatcgacacctctttgatcacaatcgctgaatctttctacgatgatgaattctgggctgct |
53942867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 18888903 - 18889083
Alignment:
| Q |
16 |
caacatcagaagaagttacaagtttcgatatgaaatctgcacattggttcccattaattttttaagtgtatgagaaaccgtaatgttactttgaaggtgc |
115 |
Q |
| |
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||||||||||||||| | |||||||| ||||||||||||| ||||||||||| | |||| |||||||||||||| || ||||||||||| || |
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| T |
18888903 |
caacatcagaagaagctccaagtttcatcatgaaatctgcactttggttcccatc-----tctaagcgtatgagaaaccgtgatattactttgaagaagc |
18888997 |
T |
|
| Q |
116 |
aaatattttatgtcttaaataagaaccacatagatatggtaacagtcaatggggtcattaatcaaattaatgcaaacaggataatc |
201 |
Q |
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|||| |||||||| || |||||| ||||||||| |||||| | ||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
18888998 |
aaattttttatgtattgaataagggccacatagacatggtacctctcaatggagccattaatcaaattaatgcaaacaagataatc |
18889083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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