View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15409_low_11 (Length: 250)
Name: NF15409_low_11
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15409_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 4184818 - 4184602
Alignment:
| Q |
19 |
tatatggcttcagacctctctaagaagggatcaattctagttgtttctttgattctagaaatgacctaagataaatcacatatgaacccattgatggtgg |
118 |
Q |
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| T |
4184818 |
tatatggcttcagacctctctaagaagggatcaattctagttgtttctttgattctagaaatgacctaagataaatcacatatgaacccattgatggtgg |
4184719 |
T |
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| Q |
119 |
aagttagacaatgaattgtgctgggagcgtacttctctctaaagaaaccatcaatttttcccaacacaaatatataatggttccaatatgaagaagaaag |
218 |
Q |
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| T |
4184718 |
aagttagacaatgaattgtgct-ggagcgcacatctctctaaagaaac---caatttt--ctaaaacacatatataatggttccaatatgaagaagaaag |
4184625 |
T |
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| Q |
219 |
ttacacataacatcaagtataat |
241 |
Q |
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| T |
4184624 |
ttacacataacatcaagtataat |
4184602 |
T |
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