View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15409_low_12 (Length: 246)
Name: NF15409_low_12
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15409_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 13718204 - 13717974
Alignment:
| Q |
1 |
ttgcgcgaattgccatccaaaatatgtttcggacattcagtaaattgaccatacaaaataattagtgt--tatgaggtattccatcttcttgaaagcctc |
98 |
Q |
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| T |
13718204 |
ttgcacgaattgccatccaaaatatgtttcggacattcagtaaattgaccatacaaaataattagtgtgttatgaggtattccatcttcttgaaagcctc |
13718105 |
T |
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| Q |
99 |
tctacttcaacccaggagttttgacgtatgatttcaattttacttgttccctttaaacacgataaagcacaaatcaaacaaaatacatgtacatatgtta |
198 |
Q |
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| T |
13718104 |
tctacttcaacccaggagttttgacgtatgatttcaattttacttcttccttttaaacacgataaagcacaaatcaaacaaaataaatgtacatatgtta |
13718005 |
T |
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| Q |
199 |
gaacttcaacactcctatttagagaaattaa |
229 |
Q |
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| T |
13718004 |
gaacttcaacactcctatttagagaaattaa |
13717974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 224
Target Start/End: Complemental strand, 29470183 - 29469987
Alignment:
| Q |
37 |
tcagtaaattgaccatacaaaataattagtgttatgaggtattccatcttcttgaaagcctct----------ctacttcaacccaggagttttgacgta |
126 |
Q |
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| T |
29470183 |
tcagtaaattggccatccataataattagtgttctgaggttttccatcttcttgaaagcctcttcatcccattctacttcaatccgggagcttggacata |
29470084 |
T |
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| Q |
127 |
tgatttcaattttacttgttccctttaaacacgataaagcacaaatcaaacaaaatacatgtacatatgttagaacttcaacactcctatttagagaa |
224 |
Q |
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| T |
29470083 |
tgatttcaattttacttgttcccttttagcatgaaaaagcacaaa-ataccaaaatacatgtacatatgttagtacttcaactcacctatttatagaa |
29469987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 29705866 - 29705898
Alignment:
| Q |
125 |
tatgatttcaattttacttgttccctttaaaca |
157 |
Q |
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| T |
29705866 |
tatgatttcaattttacttgttccctataaaca |
29705898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 5921678 - 5921720
Alignment:
| Q |
57 |
aataattagtgttatgaggtattccatcttcttgaaagcctct |
99 |
Q |
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| T |
5921678 |
aataattagcgttctgaggttttccatcttcttgaaagcctct |
5921720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 5921756 - 5921789
Alignment:
| Q |
125 |
tatgatttcaattttacttgttccctttaaacac |
158 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
5921756 |
tatgatttcaattttacttgttcccttttaacac |
5921789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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