View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15409_low_3 (Length: 404)
Name: NF15409_low_3
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15409_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 48658226 - 48657854
Alignment:
| Q |
19 |
gctatcactacagcttcaatctctccgtgtttacacgttgaacctgaaaagacctcatcaccagnnnnnnncgtgacaggtagggactctccagtaaggg |
118 |
Q |
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| T |
48658226 |
gctatcactacagcttcaatctctccgtgtttacacgttgaacctgaaaagacctcgtcaccagtttttttcgtgacaggtagggactctccagtaaggg |
48658127 |
T |
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| Q |
119 |
ctgactgcatgaatcaaaaccaagtcatcatatgaactccgtcctgattcttgatcagttatatacagtttatgtcatgaaaaaatatatagtgaaaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48658126 |
ctgactgcatgaatcaaaaccaagtcatcatatgaactccgtcctgattcttgatcagttatatacagtttatgtcatgaaaaaatatatagtgaaaaca |
48658027 |
T |
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| Q |
219 |
ttaatgagaagaaacttgtaacacaatttttcttcatttccgtctaacaaatgaagacttgcctggtcaattttgagagggtctccttcaagcaagcgag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48658026 |
ttaatgagaagaaacttgtaacacaatttttcttcatttccgtctaacaaatgaagacttgcctggtcaattttgagagggtctccttcaagcaagcgag |
48657927 |
T |
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| Q |
319 |
catcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatcatcttc |
391 |
Q |
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| T |
48657926 |
catcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatcatcttc |
48657854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 385
Target Start/End: Complemental strand, 1460509 - 1460442
Alignment:
| Q |
318 |
gcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatc |
385 |
Q |
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| T |
1460509 |
gcatcagctgggatgatgtctcctaacttaatgctgattatgtctcctggtactaaaattgcagcatc |
1460442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 385
Target Start/End: Original strand, 1498827 - 1498894
Alignment:
| Q |
318 |
gcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatc |
385 |
Q |
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| T |
1498827 |
gcatcagctggaacaatatctcctaacttgatgctgattatgtctcctggtactaaaattgcagcatc |
1498894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 392
Target Start/End: Complemental strand, 50274338 - 50274252
Alignment:
| Q |
306 |
tcaagcaagcgagcatcagctggaatgatatctcctagctttatgctgattatatccccaggtactaaaatagccgcatcatcttca |
392 |
Q |
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||||||| ||||||||||| |||||||||||||||| || |||||||| ||||| || || || ||||| || ||||| |||||| |
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| T |
50274338 |
tcaagcagacgagcatcagcaggaatgatatctcctaatttaatgctgatgatatcacctgggaccaaaattgcagcatcttcttca |
50274252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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