View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15409_low_4 (Length: 386)
Name: NF15409_low_4
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15409_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 167
Target Start/End: Complemental strand, 25681085 - 25680915
Alignment:
| Q |
5 |
agagacgagtcacctaattgttttcttattnnnnnnnnn---caaactttgctttaatgatttgtatactatacataaatacatggtac----tata-ta |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |||| || |
|
|
| T |
25681085 |
agagacgagtcacctaattgttttcttattaaaaaataaaaacaaactttgctttaataatttgtatactatacataaatacatgatacatagtatacta |
25680986 |
T |
|
| Q |
97 |
tgtacctttagtcgtcggtaatattttgtagtaatttgtaacgactcttatatttaaatatctcttgtaag |
167 |
Q |
| |
|
|||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
25680985 |
tgtaccattagtagacggtaacattttgtagtaatttgtaacgactcttatatttaaacacctcttgtaag |
25680915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University