View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15409_low_6 (Length: 277)
Name: NF15409_low_6
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15409_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 3855276 - 3855535
Alignment:
| Q |
1 |
gtgctgacattttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtgga |
100 |
Q |
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| T |
3855276 |
gtgctgacattttttatgagtaaatcctcgagaaatggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtgga |
3855375 |
T |
|
| Q |
101 |
gttttttgagttcgggcaaatgagtaaaacgtttatgaacatggtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaataagt |
200 |
Q |
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| T |
3855376 |
gttttttaagtttgggcaaatgagtaagatatttatcaacatggtatatcattaagaccccattcccattcaagttcaaaacaacaagaggtgaataagt |
3855475 |
T |
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| Q |
201 |
tagaatgccatgtggcaagcaaatgggggtagtggaagagtgctgcaaaaaagtgagatc |
260 |
Q |
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| T |
3855476 |
tagaatgggacctgggaagcaaatgggggtagtggaagagtgctgcaaaaaagtgagatc |
3855535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 5 - 246
Target Start/End: Complemental strand, 4141343 - 4141105
Alignment:
| Q |
5 |
tgacattttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttt |
104 |
Q |
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| T |
4141343 |
tgacattttttatgagcaaatcctcaagaagtggacatacagagagaatctgaataagatatttaagctttagaaaatgaacctttgtcatgtggagttt |
4141244 |
T |
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| Q |
105 |
tttgagttcgggcaaatgagtaaaacgtttatgaacatggtgtatagttaagaccccattcccattcaagttcaaaacaacaagaggtgaataagttaga |
204 |
Q |
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| T |
4141243 |
ttcgaggttgggcagattagtataagattcataaacacagtctattgttaacaccccattcccattcaagttcaaaacaacaagagttgaacaa---aga |
4141147 |
T |
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| Q |
205 |
atgccatgtggcaagcaaatgggggtagtggaagagtgctgc |
246 |
Q |
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| T |
4141146 |
atgttatttggcaagtaaatcggggtagcggaagagtgctgc |
4141105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 170
Target Start/End: Complemental strand, 1882095 - 1881932
Alignment:
| Q |
7 |
acattttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttt |
106 |
Q |
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| T |
1882095 |
acatttttgatgagtaaatcctcaagaagcggacatacagagagaatcttaataagaaattgaagctttagaaaatgaacccttgtgaagtggagttttt |
1881996 |
T |
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| Q |
107 |
tgagttcgggcaaatgagtaaaacgtttatgaacatggtgtatagttaagaccccattcccatt |
170 |
Q |
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| T |
1881995 |
tgaggttgggcaaattagtaagagagttatgaacattgtcaatagttaagaccccattcccatt |
1881932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 41541889 - 41541770
Alignment:
| Q |
7 |
acattttttatgagtaaatcctcgagaagtggacatacagagagaatcttaataagatatttaagctttcgaaaacgaacctttgtcatgtggagttttt |
106 |
Q |
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|||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||| ||| ||||||| ||||| ||||| |||| | ||||||||||| |
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| T |
41541889 |
acatttttgatgagtaaatcctcaagaagcggacatacggagagaatcttaataagaaattgaagctttggaaaatgaacccttgtgaagtggagttttt |
41541790 |
T |
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| Q |
107 |
tgagttcgggcaaatgagta |
126 |
Q |
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| T |
41541789 |
tgaggttgggcaaattagta |
41541770 |
T |
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