View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15409_low_8 (Length: 266)
Name: NF15409_low_8
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15409_low_8 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 48245 - 48017
Alignment:
| Q |
17 |
taaaagaagtccatagaaatttatcaataataatcaacaacaaaatcatcatctcatattatcaccacacctccaatttcttaaatccagaaatcgtcaa |
116 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48245 |
taaaaaaagtccatagaaatttatcaatagtaatcaacaacaaaatcatcatctcatattatcac---acctccaatttcttaaatccagaaatcgtcaa |
48149 |
T |
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| Q |
117 |
caacaatgtcattttcttcttagaatttgatcatcggctacaataaataaaactttcagaacctttaaagatccacacttacggtttatacctccttttc |
216 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
48148 |
caacaatgtctttttcttcttagaatttgattatcggctacaataaataaatctttcaaaacctttaaaggtccacacttacggtttatacctccttttc |
48049 |
T |
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| Q |
217 |
ctttataaattcatagcttcaattcctacaac |
248 |
Q |
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||||||||||||||||||| |||||||||||| |
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| T |
48048 |
ctttataaattcatagctttaattcctacaac |
48017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 27439117 - 27439345
Alignment:
| Q |
17 |
taaaagaagtccatagaaatttatcaataataatcaacaacaaaatcatcatctcatattatcaccacacctccaatttcttaaatccagaaatcgtcaa |
116 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27439117 |
taaaaaaagtccatagaaatttatcaatagtaatcaacaacaaaatcatcatctcatattatcac---acctccaatttcttaaatccagaaatcgtcaa |
27439213 |
T |
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| Q |
117 |
caacaatgtcattttcttcttagaatttgatcatcggctacaataaataaaactttcagaacctttaaagatccacacttacggtttatacctccttttc |
216 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27439214 |
caacaatgtctttttcttcttagaatttgattatcggctacaataaataaatctttcaaaacctttaaaggtccacacttacggtttatacctccttttc |
27439313 |
T |
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| Q |
217 |
ctttataaattcatagcttcaattcctacaac |
248 |
Q |
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||||||||||||||||||| |||||||||||| |
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| T |
27439314 |
ctttataaattcatagctttaattcctacaac |
27439345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 123
Target Start/End: Complemental strand, 9928215 - 9928122
Alignment:
| Q |
33 |
aaatttatcaataataatcaacaacaaaatcatcatc---tcatattatcaccacacctccaatttcttaaatccagaaatcgtcaacaacaat |
123 |
Q |
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|||||||| || ||||||||||||||||||||||||| || | | |||| ||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
9928215 |
aaatttattaacaataatcaacaacaaaatcatcatcatctcttctcgtcactacacctccaatttctaaaattcagaaatcatcaacaacaat |
9928122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 26 - 248
Target Start/End: Complemental strand, 38473316 - 38473091
Alignment:
| Q |
26 |
tccatagaaatttatcaataataatcaacaacaaaatcatcatc---tcatattatcaccacacctccaatttcttaaatccagaaatcgtcaacaacaa |
122 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||| |||||||||| |
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| T |
38473316 |
tccatagaaatttatcaataataatcatcaacaaaatcatcatcatctcatattatcactacacctccaattttttaaatccagaaatcatcaacaacaa |
38473217 |
T |
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| Q |
123 |
tgtcattttcttcttagaatttgatcatcggctacaataaataaaactttcagaacctttaaagatccacacttacggtttatacctccttttcctttat |
222 |
Q |
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|| | |||||||||||||||||||| || |||| ||||||||||| |||||| || |||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
38473216 |
tgcctttttcttcttagaatttgattattggctgcaataaataaatctttcaaaatctttaaagatccacacttacggttcatacctccttttcctctat |
38473117 |
T |
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| Q |
223 |
aaattcatagcttcaattcctacaac |
248 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38473116 |
aaattcatagcttcaattcctacaac |
38473091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 5206590 - 5206672
Alignment:
| Q |
118 |
aacaatgtcattttcttcttagaatttgatcatcggc--tacaataaataaaactttcagaacctttaaagatccacacttac |
198 |
Q |
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||||||||| |||||||||||||||||||| |||||| | ||||||||||| |||| ||||||||||||| | ||||||||| |
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| T |
5206590 |
aacaatgtctttttcttcttagaatttgattatcggctgtgcaataaataaatcttttagaacctttaaaggttcacacttac |
5206672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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