View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15409_low_9 (Length: 264)
Name: NF15409_low_9
Description: NF15409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15409_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 13718513 - 13718260
Alignment:
| Q |
11 |
caaaggagaacactatctataaaaccagaaatgtatgagaatgaaatatcaattttggatttgaggttactacgcgtcttcattgtccagcgtaaagtca |
110 |
Q |
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| T |
13718513 |
caaaggagaacactatctataaaaccagaaatgtatgagaatgaaatatcaatttcggatttgaggttactacgcgtcttcattgtccagcgtaaagtca |
13718414 |
T |
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| Q |
111 |
tcatccattgtcctcattaatggccatttacatctttctatttggttggtgtcagtagagcgaaaagggaaaggataaagggaaaggagggttgaattgt |
210 |
Q |
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| T |
13718413 |
tcatccattgtcctcattaatgggcatttacatctttctatttggttggtgtcagtagagcgaaaagggaaaggataaagggaaaggacggttgaattgt |
13718314 |
T |
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| Q |
211 |
agtggtggtagaatatcaccgcaatccaactctccttccttttcttcttttcct |
264 |
Q |
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| T |
13718313 |
agtggtggtggaatatcaccgcaatccaactctccttcctcttcttcttttcct |
13718260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 27322397 - 27322275
Alignment:
| Q |
14 |
aggagaacactatctataaaaccagaaatgtatgagaatgaaatatcaattttggatttgaggttactacgcgtcttcattgtccagcgtaaagtcatca |
113 |
Q |
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| T |
27322397 |
aggagaacactatctataaaagcagaaacgtatgagactggaacatcaattccggatttgagg----tacgtgttttcattggtcagcgtaaagtcctca |
27322302 |
T |
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| Q |
114 |
tccattgtcctcattaatggccattta |
140 |
Q |
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| T |
27322301 |
tccattatcctcgttaatgggcattta |
27322275 |
T |
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