View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1540_high_10 (Length: 351)
Name: NF1540_high_10
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1540_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 30 - 320
Target Start/End: Original strand, 32702481 - 32702763
Alignment:
| Q |
30 |
actggctaggcaaataattcaaattgactatcaacaagaagatctttaaaacaaatataaaatcaaacaaatatgtcatcatggctttctagtcaatact |
129 |
Q |
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| T |
32702481 |
actggctaggcaaataattcaaattaactatcaacaagaagatctttaaaacaaatataaaatcaaacaaatatgtaatcatggctttctagt------t |
32702574 |
T |
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| Q |
130 |
atggtaatatttatgaccttagttttctctttgggcagggcagcatgtgatcggttgcatttttgttaaagcggttaaaaacctcctcagtgacaccttc |
229 |
Q |
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| T |
32702575 |
atggtaatatttatgaccttagttttctctttgggc-----agcatgtgatcggttgcatttttgttaaagcggttaaaaacctcctcagtgacaccttc |
32702669 |
T |
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| Q |
230 |
accaaaatgactaac---aaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccattatcaagttcattcaaatttacttca |
320 |
Q |
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| T |
32702670 |
accaaaatgactaaccaacaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccattatcaagttcattcaaatttacttca |
32702763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 32626882 - 32626954
Alignment:
| Q |
222 |
acaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccat |
294 |
Q |
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| T |
32626882 |
acaccttcaccaaaatgactgactagcaaaggttcagccaaagctctcatgcattgtgccacattgtatccat |
32626954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 190 - 294
Target Start/End: Original strand, 5810555 - 5810659
Alignment:
| Q |
190 |
ttttgttaaagcggttaaaaacctcctcagtgacaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacatcgta |
289 |
Q |
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| T |
5810555 |
ttttcttatagcgattaaaaatctctttaatgacaccttcaccaaagtgactagctagcaaaggttcagccacagcccttatgcattgtgccacattgta |
5810654 |
T |
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| Q |
290 |
tccat |
294 |
Q |
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||||| |
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| T |
5810655 |
tccat |
5810659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 294
Target Start/End: Original strand, 27735885 - 27735959
Alignment:
| Q |
220 |
tgacaccttcaccaaaatgactaacaaacaaaggttcagccacagcccttatgcattgtgccacatcgtatccat |
294 |
Q |
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| T |
27735885 |
tgacaccttcaccaaagtgactaactagcaaaggttcagccacagccctaatgcattgtgccatattgtatccat |
27735959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 257
Target Start/End: Original strand, 21941694 - 21941752
Alignment:
| Q |
199 |
agcggttaaaaacctcctcagtgacaccttcaccaaaatgactaacaaacaaaggttca |
257 |
Q |
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| T |
21941694 |
agcggttaaatacctcttcagtcacaccttcaccaaaatgactaataagcaaaggttca |
21941752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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