View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1540_high_6 (Length: 419)

Name: NF1540_high_6
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1540_high_6
NF1540_high_6
[»] chr6 (7 HSPs)
chr6 (158-419)||(2886201-2886460)
chr6 (50-124)||(2886090-2886164)
chr6 (285-414)||(2862352-2862479)
chr6 (285-414)||(2881655-2881782)
chr6 (30-113)||(2866871-2866954)
chr6 (285-364)||(16835043-16835121)
chr6 (285-364)||(12797657-12797735)
[»] chr5 (7 HSPs)
chr5 (313-391)||(41997824-41997902)
chr5 (311-406)||(36941097-36941193)
chr5 (313-391)||(557877-557955)
chr5 (313-386)||(36949872-36949946)
chr5 (367-414)||(21911076-21911123)
chr5 (285-364)||(36424774-36424852)
chr5 (285-364)||(39519521-39519599)
[»] chr8 (6 HSPs)
chr8 (311-406)||(4241913-4242009)
chr8 (285-386)||(8330186-8330287)
chr8 (285-386)||(21959569-21959670)
chr8 (290-364)||(7002780-7002852)
chr8 (285-362)||(17021405-17021481)
chr8 (285-362)||(17551842-17551918)
[»] scaffold0070 (2 HSPs)
scaffold0070 (285-386)||(59592-59693)
scaffold0070 (285-386)||(63794-63895)
[»] chr3 (5 HSPs)
chr3 (311-406)||(3673731-3673827)
chr3 (311-391)||(8884352-8884432)
chr3 (285-364)||(18468348-18468426)
chr3 (285-364)||(23665003-23665081)
chr3 (359-393)||(28126365-28126399)
[»] scaffold0017 (1 HSPs)
scaffold0017 (285-386)||(149767-149868)
[»] scaffold0061 (1 HSPs)
scaffold0061 (290-386)||(48771-48867)
[»] chr4 (6 HSPs)
chr4 (290-386)||(7899767-7899863)
chr4 (285-364)||(37263445-37263523)
chr4 (290-364)||(13060603-13060676)
chr4 (285-364)||(29349089-29349167)
chr4 (359-406)||(32546022-32546069)
chr4 (285-371)||(19103102-19103187)
[»] scaffold0628 (2 HSPs)
scaffold0628 (285-406)||(5832-5955)
scaffold0628 (285-390)||(7616-7723)
[»] scaffold0060 (1 HSPs)
scaffold0060 (290-386)||(51725-51821)
[»] chr7 (10 HSPs)
chr7 (360-408)||(9010500-9010548)
chr7 (285-364)||(12802418-12802496)
chr7 (285-364)||(10391969-10392047)
chr7 (285-396)||(1044427-1044540)
chr7 (366-411)||(10531752-10531797)
chr7 (367-407)||(10499017-10499057)
chr7 (367-407)||(10504046-10504086)
chr7 (367-411)||(13346253-13346297)
chr7 (316-364)||(15975008-15975056)
chr7 (370-406)||(23866888-23866924)
[»] chr2 (4 HSPs)
chr2 (285-364)||(9184299-9184377)
chr2 (285-364)||(30652050-30652128)
chr2 (285-364)||(44630367-44630445)
chr2 (285-364)||(25496266-25496344)
[»] chr1 (3 HSPs)
chr1 (285-364)||(25844892-25844970)
chr1 (367-407)||(17213035-17213075)
chr1 (285-364)||(10136461-10136539)
[»] scaffold0015 (1 HSPs)
scaffold0015 (285-386)||(213178-213279)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 2e-87; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 158 - 419
Target Start/End: Original strand, 2886201 - 2886460
Alignment:
Q  158 cattttatttgctcaattagaaaaatatatctatttaattccacatcttgtcnnnnnnnnnnnnntctatttaattccaccagnnnnnnnnn-gaattta 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||             ||| ||| |||||||||           |||||||    
T  2886201 cattttatttgctcaattagaaaaatatatctatttaattccacatcttgtcaaaaaaaaaa---tctcttttattccaccaaaaaaaaaaaagaattta 2886297  T
Q  257 attagtactataatttaacggcgtacatctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2886298 attagtactataatttaacggcgtacatctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggt 2886397  T
Q  357 ggattgttaaaacatgtgtgaaaattgagttaaaagactagacataaattttcacattaaaaa 419  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2886398 ggattgttgaaacatgtgtgaaaattgagttaaaagattagacataaattttcacattaaaaa 2886460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 2886090 - 2886164
Alignment:
Q  50 tgaccaagttatcttggagacatacgatttgttgattttgtaggcgtgctgaaattgaaaactataggccagatt 124  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2886090 tgaccaagttatcttggagacatacaatttgttgattttgtaggcgtgctgaaattgaaaactataggccagatt 2886164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 285 - 414
Target Start/End: Original strand, 2862352 - 2862479
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattga 384  Q
    |||| ||||||| ||||||||||||||| ||||||||||||||||| |||| | ||||||||| ||||||| ||||||||  ||||||||| ||||||||    
T  2862352 ctttgtttattagcaatcttataaaaacttctttgacgttatttctgaaacta-ttttaaaatccaagtgg-ggattgttggaacatgtgtaaaaattga 2862449  T
Q  385 gttaaaagactagacataaattttcacatt 414  Q
    ||||||| |||||||| ||||| |||||||    
T  2862450 gttaaaaaactagacacaaattctcacatt 2862479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 285 - 414
Target Start/End: Original strand, 2881655 - 2881782
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattga 384  Q
    |||| ||||||| ||||||||||||||| ||||||||||||||||| |||| | ||||||||| ||||||| ||||||||  ||||||||| ||||||||    
T  2881655 ctttgtttattagcaatcttataaaaacatctttgacgttatttctgaaacta-ttttaaaatccaagtgg-ggattgttggaacatgtgtaaaaattga 2881752  T
Q  385 gttaaaagactagacataaattttcacatt 414  Q
    ||||||| |||||||| ||||| |||||||    
T  2881753 gttaaaaaactagacacaaattctcacatt 2881782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 2866871 - 2866954
Alignment:
Q  30 atttagattttgtatcttggtgaccaagttatcttggagacatacgatttgttgattttgtaggcgtgctgaaattgaaaacta 113  Q
    |||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| |||||||| ||||||    
T  2866871 atttaggttttgtatcttggcgaccaagttatctaggagacatacgatttgttgattttgtgggcgtgttgaaattggaaacta 2866954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 16835043 - 16835121
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  16835043 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 16835121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 12797657 - 12797735
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| |||||| ||| |||||| ||||||||||||| | |||| |||||| ||| |||||||| ||||||||    
T  12797657 ctttgtttattagcaatctaatagaaacgt-tttgacgttattttttaaactattttttaaagtcaagtgggggattgtt 12797735  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 41997902 - 41997824
Alignment:
Q  313 gtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattgagttaaaa 391  Q
    |||||||||||||||| | ||||||||||| |||||||||||| ||||||||  |||||||||||||||||||||||||    
T  41997902 gtctttgacgttatttttgaaaccattttttaaattcaagtgggggattgttggaacatgtgtgaaaattgagttaaaa 41997824  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 406
Target Start/End: Original strand, 36941097 - 36941193
Alignment:
Q  311 acgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattgagttaaa-agactagacataaatt 406  Q
    |||||||||||||||||| | ||||||||||| |||||||||||| ||||||||  |||||||||| ||||||||||||| |||||| ||| |||||    
T  36941097 acgtctttgacgttatttttgaaaccattttttaaattcaagtgggggattgttggaacatgtgtggaaattgagttaaacagactaaacacaaatt 36941193  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 557955 - 557877
Alignment:
Q  313 gtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattgagttaaaa 391  Q
    |||||||||||||||| | ||||||||||| |||||||||||| ||||||||  |||||||||| ||||||||||||||    
T  557955 gtctttgacgttatttttgaaaccattttttaaattcaagtgggggattgttggaacatgtgtggaaattgagttaaaa 557877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 36949946 - 36949872
Alignment:
Q  313 gtctttgacgttatttcta-aaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattgagt 386  Q
    |||||| |||||||||||  ||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  36949946 gtcttttacgttatttctcgaaatcattttttaaattcaagtgggggattgttgaaacatgtgtgaaaattgagt 36949872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 414
Target Start/End: Complemental strand, 21911123 - 21911076
Alignment:
Q  367 aacatgtgtgaaaattgagttaaaagactagacataaattttcacatt 414  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||    
T  21911123 aacatgtgtgaaaattaagttaaaatactaaacataaattttcacatt 21911076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 36424852 - 36424774
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | |||||||||||||||||||||||| | ||||||    
T  36424852 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccatttttaaaattcaagtggggaattgtt 36424774  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 39519599 - 39519521
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||| | ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  39519599 ctttgtttattagcaaccttatagaaacat-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 39519521  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 311 - 406
Target Start/End: Original strand, 4241913 - 4242009
Alignment:
Q  311 acgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattgagttaaa-agactagacataaatt 406  Q
    |||||||||||||||||| | ||||||||||| |||||||||||| ||||||||  |||||||||| ||||||||||||| |||||| ||| |||||    
T  4241913 acgtctttgacgttatttttgaaaccattttttaaattcaagtgggggattgttggaacatgtgtggaaattgagttaaacagactaaacacaaatt 4242009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 386
Target Start/End: Original strand, 8330186 - 8330287
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattga 384  Q
    |||| ||||||| ||| |||||  |||||||||||||||||||  | ||| ||||||| ||||||||||||  |||||||  ||||| |||| |||||||    
T  8330186 ctttgtttattagcaaccttatggaaacgtctttgacgttattgttgaaatcattttttaaattcaagtgggagattgttggaacatatgtggaaattga 8330285  T
Q  385 gt 386  Q
    ||    
T  8330286 gt 8330287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 386
Target Start/End: Complemental strand, 21959670 - 21959569
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattga 384  Q
    |||| ||||||| ||| |||||  ||||||||||||||||||| || ||| ||| ||| |||||||| ||| ||||||||  ||||| |||  |||||||    
T  21959670 ctttgtttattagcaaccttatggaaacgtctttgacgttattactgaaatcatattttaaattcaattggaggattgttggaacatatgttgaaattga 21959571  T
Q  385 gt 386  Q
    ||    
T  21959570 gt 21959569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 7002852 - 7002780
Alignment:
Q  290 tttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    ||||||||||| |||||| |||||| ||| || |||||| | |||| ||||||||||||||||||| ||||||||    
T  7002852 tttattatcaaccttatagaaacgt-tttcacattatttatgaaactatttttaaaattcaagtgg-ggattgtt 7002780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 17021481 - 17021405
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattg 362  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | |||||||||||  ||||||||||| ||||||    
T  17021481 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccatttttttaattcaagtgggggattg 17021405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 362
Target Start/End: Complemental strand, 17551918 - 17551842
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattg 362  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | |||||||||||  ||||||||||| ||||||    
T  17551918 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccatttttttaattcaagtgggggattg 17551842  T

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Target: scaffold0070 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 386
Target Start/End: Complemental strand, 59693 - 59592
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattga 384  Q
    |||||||||||| ||| |||||  ||||||||||||||||||| || ||| ||||||| |||||||||||| ||||||||  ||||| |||| |||||||    
T  59693 ctttctttattagcaaccttatggaaacgtctttgacgttattactgaaatcattttttaaattcaagtgggggattgttggaacatatgtggaaattga 59594  T
Q  385 gt 386  Q
    ||    
T  59593 gt 59592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 386
Target Start/End: Complemental strand, 63895 - 63794
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattga 384  Q
    |||||||||||| ||| |||||  ||||||||||||||||||| || ||| ||||||| |||||||||||| ||||||||  ||||| |||| |||||||    
T  63895 ctttctttattagcaaccttatggaaacgtctttgacgttattactgaaatcattttttaaattcaagtgggggattgttggaacatatgtggaaattga 63796  T
Q  385 gt 386  Q
    ||    
T  63795 gt 63794  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 406
Target Start/End: Complemental strand, 3673827 - 3673731
Alignment:
Q  311 acgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattgagttaaa-agactagacataaatt 406  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||  |||||||  |||||||||| ||||||||||||| |||||| ||| |||||    
T  3673827 acgtctttgacgttatttttgaaaccattttttaaattcaagtgggtgattgttggaacatgtgtggaaattgagttaaacagactaaacacaaatt 3673731  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 8884432 - 8884352
Alignment:
Q  311 acgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattgagttaaaa 391  Q
    |||||||||||||||||| | ||||||||||| |||||||||||| ||||||||  |||||||||| ||| ||||||||||    
T  8884432 acgtctttgacgttatttttgaaaccattttttaaattcaagtgggggattgttggaacatgtgtggaaactgagttaaaa 8884352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 18468426 - 18468348
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  18468426 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 18468348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 23665003 - 23665081
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  23665003 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 23665081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 393
Target Start/End: Complemental strand, 28126399 - 28126365
Alignment:
Q  359 attgttaaaacatgtgtgaaaattgagttaaaaga 393  Q
    |||||| ||||||||||||||||||||||||||||    
T  28126399 attgttgaaacatgtgtgaaaattgagttaaaaga 28126365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 386
Target Start/End: Complemental strand, 149868 - 149767
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattga 384  Q
    |||| ||||||| ||| |||||  ||||||||||||||||||| || ||| ||||||| |||||||||||| ||||||||  ||||| |||| |||||||    
T  149868 ctttgtttattagcaaccttatggaaacgtctttgacgttattactgaaatcattttttaaattcaagtgggggattgttggaacatatgtggaaattga 149769  T
Q  385 gt 386  Q
    ||    
T  149768 gt 149767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 48771 - 48867
Alignment:
Q  290 tttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattgagt 386  Q
    ||||||| ||| |||||  ||||||||||||||||||| || ||| ||||||| |||||||||||| ||||||||  ||||| |||| |||||||||    
T  48771 tttattagcaaccttatggaaacgtctttgacgttattactgaaatcattttttaaattcaagtgggggattgttggaacatatgtggaaattgagt 48867  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 7899767 - 7899863
Alignment:
Q  290 tttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattgagt 386  Q
    ||||||| ||| |||||  ||||||||||||| ||||| || ||| ||||||| |||||||||||| ||||||||  ||||| |||| |||||||||    
T  7899767 tttattagcaaccttattgaaacgtctttgacattattactgaaatcattttttaaattcaagtgggggattgttggaacatatgtggaaattgagt 7899863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 37263445 - 37263523
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  37263445 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 37263523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 13060676 - 13060603
Alignment:
Q  290 tttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  13060676 tttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 13060603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 29349089 - 29349167
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||| | ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  29349089 ctttgtttattagcaaccttatagaaacat-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 29349167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 406
Target Start/End: Complemental strand, 32546069 - 32546022
Alignment:
Q  359 attgttaaaacatgtgtgaaaattgagttaaaagactagacataaatt 406  Q
    |||||| | ||||||||||||||||||||||||||| | |||||||||    
T  32546069 attgttgagacatgtgtgaaaattgagttaaaagacgaaacataaatt 32546022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 19103187 - 19103102
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacat 371  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||| ||||| |||||||| ||| |||||||| ||||||    
T  19103187 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaacctttttttaaattcaaatgggggattgttgaaacat 19103102  T

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Target: scaffold0628 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 406
Target Start/End: Complemental strand, 5955 - 5832
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccattttta--aaattcaagtggtggattgttaaaacatgtgtgaaaatt 382  Q
    |||| ||||||| ||| ||| || |||  |||| |||||| ||||| |||||||||||   ||||||| |||| ||||||||  |||||||||| |||||    
T  5955 ctttgtttattagcaaccttttagaaatctcttggacgttgtttctgaaaccatttttttgaaattcatgtgggggattgttggaacatgtgtggaaatt 5856  T
Q  383 gagttaaaagactagacataaatt 406  Q
    ||||||||| |||| ||| |||||    
T  5855 gagttaaaatactaaacacaaatt 5832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 390
Target Start/End: Complemental strand, 7723 - 7616
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccattt--ttaaaattcaagtggtggattgttaaaacatgtgtgaaaatt 382  Q
    |||| ||||||| ||| ||| || |||  |||| |||||||||||| |||||||||  || ||||||| |||| ||||||||  |||||||||| |||||    
T  7723 ctttgtttattagcaaccttttagaaatctcttggacgttatttctgaaaccatttattttaaattcatgtgggggattgttggaacatgtgtggaaatt 7624  T
Q  383 gagttaaa 390  Q
    ||||||||    
T  7623 gagttaaa 7616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 386
Target Start/End: Original strand, 51725 - 51821
Alignment:
Q  290 tttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattgagt 386  Q
    ||||||| ||| |||||  ||||||||||||||||||| || ||| ||||||| ||||| |||| |  |||||||  ||||| ||||||||||||||    
T  51725 tttattagcaaccttatggaaacgtctttgacgttattactgaaatcattttttaaatttaagtaggtgattgttggaacatatgtgaaaattgagt 51821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 9010548 - 9010500
Alignment:
Q  360 ttgttaaaacatgtgtgaaaattgagttaaaagactagacataaatttt 408  Q
    ||||| ||||||||||||||||||||||||||| ||| |||||||||||    
T  9010548 ttgttgaaacatgtgtgaaaattgagttaaaagtctaaacataaatttt 9010500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 12802496 - 12802418
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  12802496 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 12802418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 10391969 - 10392047
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| |||||||||| |||||| ||||||||||||  | ||||||||||| ||||| |||||  ||||||||    
T  10391969 ctttgtttattagcaatcttatataaacgt-tttgacgttattattgaaaccattttttaaattaaagtgagggattgtt 10392047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 396
Target Start/End: Complemental strand, 1044540 - 1044427
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaatt-- 382  Q
    |||| ||||| | ||| |||||| ||||||||||||  |||||  | ||| ||||||| ||| |||||| | ||||| || ||||||||||| |||||      
T  1044540 ctttgtttatcagcaaccttatagaaacgtctttgaaattattcttgaaatcattttttaaactcaagtcggggattcttgaaacatgtgtggaaattga 1044441  T
Q  383 gagttaaaagacta 396  Q
    ||||||||||||||    
T  1044440 gagttaaaagacta 1044427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 411
Target Start/End: Original strand, 10531752 - 10531797
Alignment:
Q  366 aaacatgtgtgaaaattgagttaaaagactagacataaattttcac 411  Q
    |||| |||||||||||||| ||||||||||| ||| ||||||||||    
T  10531752 aaacttgtgtgaaaattgaattaaaagactaaacacaaattttcac 10531797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 10499017 - 10499057
Alignment:
Q  367 aacatgtgtgaaaattgagttaaaagactagacataaattt 407  Q
    |||||||||| ||||||| ||||||||||| ||||||||||    
T  10499017 aacatgtgtggaaattgaattaaaagactaaacataaattt 10499057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 10504046 - 10504086
Alignment:
Q  367 aacatgtgtgaaaattgagttaaaagactagacataaattt 407  Q
    |||||||||| ||||||| ||||||||||| ||||||||||    
T  10504046 aacatgtgtggaaattgaattaaaagactaaacataaattt 10504086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 13346253 - 13346297
Alignment:
Q  367 aacatgtgtgaaaattgagttaaaagactagacataaattttcac 411  Q
    |||||||||| ||||||| ||||||||| | ||||||||||||||    
T  13346253 aacatgtgtggaaattgaattaaaagacaaaacataaattttcac 13346297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 15975056 - 15975008
Alignment:
Q  316 tttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    ||||||||||||||| ||||||||||  ||| |||||||| ||||||||    
T  15975056 tttgacgttatttctcaaaccattttgtaaactcaagtggaggattgtt 15975008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 406
Target Start/End: Complemental strand, 23866924 - 23866888
Alignment:
Q  370 atgtgtgaaaattgagttaaaagactagacataaatt 406  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  23866924 atgtgtgaaaattgagttaaaagactaaacacaaatt 23866888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 9184299 - 9184377
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  9184299 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 9184377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 30652128 - 30652050
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  30652128 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 30652050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 44630367 - 44630445
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  44630367 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 44630445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 25496266 - 25496344
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| ||| || ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  25496266 ctttgtttattagcaaccttatagaaaagt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 25496344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 25844970 - 25844892
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| ||||||||    
T  25844970 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtgggggattgtt 25844892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 17213035 - 17213075
Alignment:
Q  367 aacatgtgtgaaaattgagttaaaagactagacataaattt 407  Q
    ||||||||||||||||||||||||||| |||||| ||||||    
T  17213035 aacatgtgtgaaaattgagttaaaagattagacacaaattt 17213075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 364
Target Start/End: Complemental strand, 10136539 - 10136461
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgtt 364  Q
    |||| ||||||| ||| |||||| |||||| ||||||||||||  | ||||||||||| |||||||||||| | ||||||    
T  10136539 ctttgtttattagcaaccttatagaaacgt-tttgacgttattattgaaaccattttttaaattcaagtggggaattgtt 10136461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 386
Target Start/End: Original strand, 213178 - 213279
Alignment:
Q  285 ctttctttattatcaatcttataaaaacgtctttgacgttatttctaaaaccatttttaaaattcaagtggtggattgttaaaacatgtgtgaaaattga 384  Q
    |||| ||||||| ||| |||||  ||||||||||||||||||| || ||| ||| ||| |||||||| ||| ||||||||  ||||| |||  |||||||    
T  213178 ctttgtttattagcaaccttatggaaacgtctttgacgttattactgaaatcatattttaaattcaattggaggattgttggaacatatgttgaaattga 213277  T
Q  385 gt 386  Q
    ||    
T  213278 gt 213279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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