View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1540_low_1 (Length: 270)
Name: NF1540_low_1
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1540_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 43570394 - 43570150
Alignment:
| Q |
9 |
agtgagatgaagaaaacaggagaactcgttgataagtaaagttctaataaaattaaaaatatgaatagccacctcttgattgacaaaacactctacggaa |
108 |
Q |
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| T |
43570394 |
agtgagttgaagaaaacaggagaactcgttgataagtaaatttctaataaaattaaaaatatgaatagccacctcttgattgacaaaacactctacggaa |
43570295 |
T |
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| Q |
109 |
ctcccatatctctcctgaaatatttgcctaaggtcacgtaattctggtaaatcggaaaatcttgcagcagcaaacatcaaagatgataccgccaccctac |
208 |
Q |
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| T |
43570294 |
ctcccatatctctcctgaaatatttgcctaaggtcgcgtaattctggtaaatcggaaaatcttgcagcagcaaacatcaaagatgataccgccaccctac |
43570195 |
T |
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| Q |
209 |
attccgcagggcagccactgtaaaagaaacagaaccagttataaa |
253 |
Q |
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| T |
43570194 |
attcctcagggcagccactgtaaaagaaacagaaccagttataaa |
43570150 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 32607244 - 32607302
Alignment:
| Q |
115 |
tatctctcctgaaatatttgcctaaggtcacgtaattctggtaaatcggaaaatcttgc |
173 |
Q |
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| T |
32607244 |
tatctctcctgaaatatttgccgaaggtcacgtaactctggtagatcagaaaatcttgc |
32607302 |
T |
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