View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1540_low_11 (Length: 370)
Name: NF1540_low_11
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1540_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 52 - 361
Target Start/End: Original strand, 34571904 - 34572213
Alignment:
| Q |
52 |
tttagccccattctctatcacacctttcatcattgtgctttgtaggaaaaccattccccacgttatcacaagatgtgaggattcctttacacaagacaca |
151 |
Q |
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| T |
34571904 |
tttagccccattctctatcacacctttcatcattgtgctttgtaggaaaaccattccccacgttatcacaagatgtgaggattcctttacacaagacaca |
34572003 |
T |
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| Q |
152 |
tcttcgccaggcattatcttgtaaagaatttcgacctgaaatgaattcccataaggaacctcaggggtgcatacactaacaagtacatcaaattcatctt |
251 |
Q |
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| T |
34572004 |
tcttcgccaggcattatcttgtaaagaatttcgacccgaaatgaattcccataaggaacctcaggggtgcatacactaacaagtacatcaaattcatctt |
34572103 |
T |
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| Q |
252 |
tagtcgctctaatataggtttgttcctcggtggtattgagagctttaaccaattttgaagcagcttttgtatagttgacgactcgagtcaaacaagacat |
351 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572104 |
tagtcgctctaatataggtttgttcctcagtggtattgagagctttaaccaattttgaagcagcttttgtatagttgacgactcgagtcaaacaagacat |
34572203 |
T |
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| Q |
352 |
atcttcatct |
361 |
Q |
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|||||||||| |
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| T |
34572204 |
atcttcatct |
34572213 |
T |
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