View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1540_low_15 (Length: 355)
Name: NF1540_low_15
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1540_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 30 - 340
Target Start/End: Original strand, 29375123 - 29375431
Alignment:
| Q |
30 |
atactaacaactataactgatgaatgtggtgatgtatacagttctactggagatctttatgaatataacagtaaatcaaaaccatcatggaaaaggcaca |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29375123 |
atactaacaactataactgatgaatgtggtgatgtatacagttctactggagatctttatgaatataacagtaaatcaaaaccatcatggaaaaggcaca |
29375222 |
T |
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| Q |
130 |
tatggcaagataaaaaggcacaagtttcatctttgatgccatctaaggggtccactttacatggattaagtgctgatcattctgaatctttgtttctttt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29375223 |
tatggcaagataaaaaggcacaagtttcatctttgataccatctaaggggtgcactttacatggattaagtgctgatcattctgaatctttgtttctttt |
29375322 |
T |
|
| Q |
230 |
aaccaaggtacagtaaaaccatgatatcaaataggaaatgtttcatgattaaattgaactttgtaaatcac-ttgtgtctcgagcatgtttaacttggca |
328 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
29375323 |
aaccaaggtacact--aaccatgatatcaaataggaaatgtttcgtga-caaaatgaactttgtaaatcactttgtgtcttgagcatgtttaacttggca |
29375419 |
T |
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| Q |
329 |
taatgtagaatt |
340 |
Q |
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|||||||||||| |
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| T |
29375420 |
taatgtagaatt |
29375431 |
T |
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