View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1540_low_17 (Length: 311)
Name: NF1540_low_17
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1540_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 75 - 309
Target Start/End: Original strand, 44547311 - 44547545
Alignment:
| Q |
75 |
ataatactgtaacagatttcggtgaagctacaatgcaagtggaggttggtcctcaggttcaagagctagaaagggtggtagctggtcctcaagatcaaga |
174 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44547311 |
ataatactataacagatttcggtgaagctacaatgcaagtggagattggtcctcaggttcaagagctagaaagggtggtagctggtcctcaagatcaaga |
44547410 |
T |
|
| Q |
175 |
gctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtggccggtcctcaggctcaagagctaggaaaggtggtgattgct |
274 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| | |||||||||||||| ||||||||||||| |
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| T |
44547411 |
gctaggaagggtggtggctggtcctcaggctcaacctcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtgattgct |
44547510 |
T |
|
| Q |
275 |
cctcaggctcaacctcaagagctaggaagggtggt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
44547511 |
cctcaggctcaacctcaagagctaggaagggtggt |
44547545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 133 - 307
Target Start/End: Original strand, 44547447 - 44547621
Alignment:
| Q |
133 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtg |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
44547447 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtgattgctcctcaggctcaacctcaagagctaggaagggtggta |
44547546 |
T |
|
| Q |
233 |
gccggtcctcaggctcaagagctaggaaaggtggtgattgctcctcaggctcaacctcaagagctaggaagggtg |
307 |
Q |
| |
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|| |||||||| |||||||||||||||| | |||| |||||| |||| |||||||||| |||||||||||||| |
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| T |
44547547 |
gctggtcctcatgctcaagagctaggaaggatggttgctgctccacaggatcaacctcaaaagctaggaagggtg |
44547621 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 169 - 309
Target Start/End: Original strand, 44547645 - 44547785
Alignment:
| Q |
169 |
tcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtggccggtcctcaggctcaagagctaggaaaggtggtg |
268 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| |||||| |
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| T |
44547645 |
tcaaaagctaggaagggtggtggcgggtcctcaagctcaacctcaagagctaggaatggtggtggctggtcctcagactcaagagctaggaagggtggtt |
44547744 |
T |
|
| Q |
269 |
attgctcctcaggctcaacctcaagagctaggaagggtggt |
309 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||||||| |
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| T |
44547745 |
gttgctccacagactcaacctcaaaagctaggaagggtggt |
44547785 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 133 - 309
Target Start/End: Original strand, 44547891 - 44548067
Alignment:
| Q |
133 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtg |
232 |
Q |
| |
|
||||||||||| || |||||| |||||| |||| |||| ||||| |||||||||| |||| ||| ||| | ||||||||| ||||||||||||||||| |
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| T |
44547891 |
tcaagagctaggaatggtggtggctggttctcagactcaaaagctaagaagggtggttgctgctccacagacccaacctcaaaagctaggaagggtggtg |
44547990 |
T |
|
| Q |
233 |
gccggtcctcaggctcaagagctaggaaaggtggtgattgctcctcaggctcaacctcaagagctaggaagggtggt |
309 |
Q |
| |
|
|| |||||||||||||||||| |||||| ||||||| | |||| || ||||||||||||||||| ||||||||||| |
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| T |
44547991 |
gctggtcctcaggctcaagagataggaagggtggtggcttctccacatgctcaacctcaagagctgggaagggtggt |
44548067 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 169 - 311
Target Start/End: Original strand, 44547849 - 44547991
Alignment:
| Q |
169 |
tcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtggccggtcctcaggctcaagagctaggaaaggtggtg |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||| ||||| ||||| ||||| ||| |||||| |
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| T |
44547849 |
tcaagagctaggaagggtggtggctggtcctcaagctcagcctcaagagctaggaatggtggtggctggttctcagactcaaaagctaagaagggtggtt |
44547948 |
T |
|
| Q |
269 |
attgctcctcaggctcaacctcaagagctaggaagggtggtgg |
311 |
Q |
| |
|
|||||| ||| | ||||||||| |||||||||||||||||| |
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|
| T |
44547949 |
gctgctccacagacccaacctcaaaagctaggaagggtggtgg |
44547991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 311
Target Start/End: Original strand, 44547525 - 44547709
Alignment:
| Q |
133 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtg |
232 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | |||||||||||||||| |||| |||| ||| |||| |||||||||| |||||||||||||| || |
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| T |
44547525 |
tcaagagctaggaagggtggtagctggtcctcatgctcaagagctaggaaggatggttgctgctccacaggatcaacctcaaaagctaggaagggtgatg |
44547624 |
T |
|
| Q |
233 |
gccggtc------ctcaggctcaagagctaggaaaggtggtgattgctcctcaggctcaacctcaagagctaggaagggtggtgg |
311 |
Q |
| |
|
|| | || ||||| ||||| ||||||||| ||||||| | |||||| |||||||||||||||||||||| |||||||| |
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|
| T |
44547625 |
gctgctccacatgctcagcctcaaaagctaggaagggtggtggcgggtcctcaagctcaacctcaagagctaggaatggtggtgg |
44547709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 311
Target Start/End: Original strand, 44547687 - 44547871
Alignment:
| Q |
133 |
tcaagagctagaaagggtggtagctggtcctcaagatcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtg |
232 |
Q |
| |
|
||||||||||| || |||||| ||||||||||| ||||||||||||||||||||| | || ||| ||| ||||||||||| |||||||||||||||| |
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|
| T |
44547687 |
tcaagagctaggaatggtggtggctggtcctcagactcaagagctaggaagggtggttgttgctccacagactcaacctcaaaagctaggaagggtggtt |
44547786 |
T |
|
| Q |
233 |
gccggtc------ctcaggctcaagagctaggaaaggtggtgattgctcctcaggctcaacctcaagagctaggaagggtggtgg |
311 |
Q |
| |
|
|| ||| |||||||||||||||||| || |||||| ||||||| || ||||||||||||||||||||||||||||||| |
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|
| T |
44547787 |
gctagtcctcaagctcaggctcaagagctagaaagagtggtggttgctccacatgctcaacctcaagagctaggaagggtggtgg |
44547871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 286
Target Start/End: Original strand, 44548089 - 44548206
Alignment:
| Q |
169 |
tcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtggccggtcctcaggctcaagagctaggaaaggtggtg |
268 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||| | ||| ||||| ||||| ||||||||| ||| ||| |
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|
| T |
44548089 |
tcaaaagctaggaagggtggtggctggtcctcaagctcagcctcaagagttaggaatggtggtgactggttctcagactcaaaagctaggaagggtagtg |
44548188 |
T |
|
| Q |
269 |
attgctcctcaggctcaa |
286 |
Q |
| |
|
|| ||||||||||||| |
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| T |
44548189 |
gctggtcctcaggctcaa |
44548206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 44547807 - 44547887
Alignment:
| Q |
169 |
tcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtggccggtcctcaggctca |
249 |
Q |
| |
|
||||||||||| ||| ||||||| || ||| || |||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
44547807 |
tcaagagctagaaagagtggtggttgctccacatgctcaacctcaagagctaggaagggtggtggctggtcctcaagctca |
44547887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 44548047 - 44548127
Alignment:
| Q |
169 |
tcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtggccggtcctcaggctca |
249 |
Q |
| |
|
||||||||| ||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
44548047 |
tcaagagctgggaagggtggttgctactccacaggctcaacctcaaaagctaggaagggtggtggctggtcctcaagctca |
44548127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 133 - 305
Target Start/End: Original strand, 44548089 - 44548261
Alignment:
| Q |
133 |
tcaagagctagaaagggtggtagctggtcctcaagatca------agagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagg |
226 |
Q |
| |
|
|||| |||||| ||||||||| ||||||||||||| ||| |||| |||||| ||||||| ||||| ||||| ||||| ||||||||||| |
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|
| T |
44548089 |
tcaaaagctaggaagggtggtggctggtcctcaagctcagcctcaagagttaggaatggtggtgactggttctcagactcaaa------agctaggaagg |
44548182 |
T |
|
| Q |
227 |
gtggtggccggtcctcaggctcaagagctaggaaaggtggtgattgctcctcaggctcaacctcaagagctaggaaggg |
305 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||| | ||||| |||||| || |||| ||||||||||| ||||||| |
|
|
| T |
44548183 |
gtagtggctggtcctcaggctcaagagctaggaaggatggtggctgctccacaaactcagcctcaagagcttggaaggg |
44548261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 311
Target Start/End: Original strand, 44547765 - 44547913
Alignment:
| Q |
169 |
tcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtggccggtcctcaggctca------agagctaggaaag |
262 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||| ||||| |||||||||||| ||| ||||||| | ||| || ||||| ||||||||||| | |
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|
| T |
44547765 |
tcaaaagctaggaagggtggttgctagtcctcaagctcaggctcaagagctagaaagagtggtggttgctccacatgctcaacctcaagagctaggaagg |
44547864 |
T |
|
| Q |
263 |
gtggtgattgctcctcaggctcaacctcaagagctaggaagggtggtgg |
311 |
Q |
| |
|
|||||| || |||||| ||||| |||||||||||||||| |||||||| |
|
|
| T |
44547865 |
gtggtggctggtcctcaagctcagcctcaagagctaggaatggtggtgg |
44547913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 311
Target Start/End: Original strand, 44547969 - 44548111
Alignment:
| Q |
169 |
tcaagagctaggaagggtggtggctggtcctcaggctcaacctcaagagctaggaagggtggtggccggtcctcaggctcaa------gagctaggaaag |
262 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| || |||||| ||||| |||| | |
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|
| T |
44547969 |
tcaaaagctaggaagggtggtggctggtcctcaggctcaa------gagataggaagggtggtggcttctccacatgctcaacctcaagagctgggaagg |
44548062 |
T |
|
| Q |
263 |
gtggtgattgctcctcaggctcaacctcaagagctaggaagggtggtgg |
311 |
Q |
| |
|
||||| | |||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
44548063 |
gtggttgctactccacaggctcaacctcaaaagctaggaagggtggtgg |
44548111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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