View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1540_low_2 (Length: 217)
Name: NF1540_low_2
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1540_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 907273 - 907489
Alignment:
| Q |
1 |
ccggctacatacttagcctcagttaatgcaaatgaagatgttttcattatgtcacccattgattcctttgttgaaacaatctttttcaagatctgacgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
907273 |
ccggctacatacttagcctcagttaatgcaaatgaagatgttttcattatgtcacccattgattcctttgttgaaacaatctttttcaagatctgacgaa |
907372 |
T |
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| Q |
101 |
actgaacagttaaagcatcacttttcttcttgagaagagcatgtcctcttgttgctccaaccaaacgtgccttaaccactccaagcattgtcactgtggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
907373 |
actgaacagttaaagcatcacttttcttcttgagaagagcatgtcctcttgttgctccaaccaaacgtgccttaaccactccaagcattgtcactgtggg |
907472 |
T |
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| Q |
201 |
gaccacattcaaacgtt |
217 |
Q |
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||||||||||||||||| |
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| T |
907473 |
gaccacattcaaacgtt |
907489 |
T |
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