View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1540_low_23 (Length: 245)
Name: NF1540_low_23
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1540_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40840110 - 40839889
Alignment:
| Q |
1 |
gcgtgggacctggatgggagtgccaagaagacttaacgttttgcttgcagggtctgttatcagctgcaagtatagacagcaatttcggattgacaagaca |
100 |
Q |
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| T |
40840110 |
gcgtggaacctggatgggagtgtcaagaagacttaacgttttgcttgcagggtctgttatcagctgcaagtatagacagcaatttcggattgacaagaca |
40840011 |
T |
|
| Q |
101 |
ctgcccaagaagacgtaaagagtatcgtatgctagcaacaaaggcgatattgttttagagtgtggcttattaattcgatgtgcggatggagaatggctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40840010 |
ctgcccaagaagacgtaaagagtatcgtatgctagcaacaaaggcgatattgttttagagtgtggcttattaattcgatgtgcggatggagaatggcttg |
40839911 |
T |
|
| Q |
201 |
gtggtttctacaaggatattgg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40839910 |
gtggtttctacaaggatattgg |
40839889 |
T |
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