View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1540_low_6 (Length: 444)

Name: NF1540_low_6
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1540_low_6
NF1540_low_6
[»] chr7 (4 HSPs)
chr7 (190-434)||(24065138-24065382)
chr7 (29-116)||(24064977-24065064)
chr7 (291-380)||(8847595-8847683)
chr7 (46-112)||(8847891-8847957)
[»] chr3 (5 HSPs)
chr3 (234-431)||(3137718-3137917)
chr3 (255-434)||(24674354-24674533)
chr3 (28-115)||(24674669-24674756)
chr3 (291-348)||(4648325-4648381)
chr3 (46-94)||(28736569-28736617)
[»] chr8 (3 HSPs)
chr8 (298-434)||(25241930-25242070)
chr8 (250-355)||(15939554-15939658)
chr8 (298-410)||(3947522-3947633)
[»] chr5 (3 HSPs)
chr5 (298-428)||(32569526-32569656)
chr5 (234-344)||(38629649-38629757)
chr5 (28-98)||(23955380-23955450)
[»] chr1 (1 HSPs)
chr1 (298-428)||(8754416-8754546)
[»] chr2 (4 HSPs)
chr2 (298-358)||(37673541-37673601)
chr2 (297-372)||(15913627-15913702)
chr2 (46-97)||(21811104-21811155)
chr2 (260-308)||(21811309-21811357)
[»] chr6 (2 HSPs)
chr6 (48-112)||(20854051-20854115)
chr6 (46-94)||(34064987-34065035)
[»] chr4 (2 HSPs)
chr4 (46-97)||(16984796-16984847)
chr4 (260-308)||(16984594-16984642)


Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 190 - 434
Target Start/End: Original strand, 24065138 - 24065382
Alignment:
Q  190 ctgttaagaaacaaaggaagatcgcaaaaatttctgcnnnnnnntgatgaagaatgaaactgtaactaacttccgccatggaaatgggaagaaaaactat 289  Q
    |||| |||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065138 ctgtgaagaaacaaaggaaaatcgcaaaaatttctgcaaaaaaatgatgaagaatgaaactgtaactaacttccgccatggaaatgggaagaaaaactat 24065237  T
Q  290 agataccatgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttataggcaatatgtaaagtaca 389  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24065238 agataccatgttatggaaagcaaaaaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttataggcaatatgtaaagtaca 24065337  T
Q  390 ttaagcctaatcacatgctaatctactagattaaactaagtataa 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24065338 ttaagcctaatcacatgctaatctactagattaaactaagtataa 24065382  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 24064977 - 24065064
Alignment:
Q  29 aacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagtattgggttgattttggcgacgcatgatgaatcat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  24064977 aacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagtatcgggttgattttggcgaggcatgatgaatcat 24065064  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 380
Target Start/End: Complemental strand, 8847683 - 8847595
Alignment:
Q  291 gataccatgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttataggcaatatg 380  Q
    ||||||||||||||| ||||||| ||| ||||| | ||||||||||||||||||| || |||  ||||   | |||||||||||||||||    
T  8847683 gataccatgttatgggaagcaaataat-gaaaaaaatctcatttctcatagatgtgaatgtgtatacaagcaatatttataggcaatatg 8847595  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 8847957 - 8847891
Alignment:
Q  46 gtccttcacttggatgaacgtagaaaacagattcagtattgggttgattttggcgacgcatgatgaa 112  Q
    |||||||||||||||| ||||| ||||| ||||||||||  |||||||| ||  || ||||||||||    
T  8847957 gtccttcacttggatgcacgtaaaaaactgattcagtatcaggttgattctgatgaggcatgatgaa 8847891  T

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Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 234 - 431
Target Start/End: Original strand, 3137718 - 3137917
Alignment:
Q  234 tgatgaagaatgaaactgtaactaacttccgccatggaaatgggaagaaaaa--ctatagataccatgttatggaaagcaaagaatagaaaatagtctca 331  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| |||||  || ||||||||||||||||||||||||  |||||||||||||||||    
T  3137718 tgatgaagaatgaaactgtaactaactcccgccatggaaatgagaaaaaaaaagctctagataccatgttatggaaagcaagaaatagaaaatagtctca 3137817  T
Q  332 tttctcatagatgtaaaagtgagtacatagagtatttataggcaatatgtaaagtacattaagcctaatcacatgctaatctactagattaaactaagta 431  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |||||| |||||||    
T  3137818 tttctcatagatgtgaaagtgagtacattcagtatttataggcaatatgtaaagtacattaagcctaatgacatgttaatcaacttgattaagctaagta 3137917  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 255 - 434
Target Start/End: Complemental strand, 24674533 - 24674354
Alignment:
Q  255 ctaacttccgccatggaaatgggaagaaaaactatagataccatgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgag 354  Q
    ||||||||| ||||||||||| |||||||| || |||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  24674533 ctaacttccaccatggaaatgagaagaaaagctctagataccatcttatggaaagcaaagaagagaaaataggctcatttctcatagatgtgaaagtgag 24674434  T
Q  355 tacatagagtatttataggcaatatgtaaagtacattaagcctaatcacatgctaatctactagattaaactaagtataa 434  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||    
T  24674433 tacatagggtatttatatgcaatatgtaaagtacattaaacctagtcacatgctaatctactatattaaactaagtataa 24674354  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 24674756 - 24674669
Alignment:
Q  28 caacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagtattgggttgattttggcgacgcatgatgaatca 115  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||  ||||||||||  ||||||||||||| | |||| ||||||||    
T  24674756 caacaataacagaattagatccttcacttggatgaacgtagaaaatggattcagtatcaggttgattttggcaaggcataatgaatca 24674669  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 4648325 - 4648381
Alignment:
Q  291 gataccatgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaa 348  Q
    ||||||||||||||| ||||||| ||| ||||  | ||||||||||||||||||||||    
T  4648325 gataccatgttatgggaagcaaataat-gaaatgaatctcatttctcatagatgtaaa 4648381  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 28736617 - 28736569
Alignment:
Q  46 gtccttcacttggatgaacgtagaaaacagattcagtattgggttgatt 94  Q
    ||||||| ||||||||||||||||| || ||||||||||  ||||||||    
T  28736617 gtccttctcttggatgaacgtagaacacggattcagtatcaggttgatt 28736569  T

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Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 298 - 434
Target Start/End: Original strand, 25241930 - 25242070
Alignment:
Q  298 tgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacataga----gtatttataggcaatatgtaaagtacattaa 393  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||    |||||| ||| ||||||||||||||||||||    
T  25241930 tgttacggaaagaaaataatagaaaatagtctcatttctcatagatgtgaaagtaagtacattgatacggtatttttagtcaatatgtaaagtacattaa 25242029  T
Q  394 gcctaatcacatgctaatctactagattaaactaagtataa 434  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  25242030 gcctaatcacatgttaatctactagattaaactaattataa 25242070  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 15939658 - 15939554
Alignment:
Q  250 tgtaactaacttccgccatggaaatgggaagaaaaactatagataccatgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaa 349  Q
    |||||||||||| | ||||||||||| ||  |||  || ||||||||||||||||||||| ||  |||  | |||||||||| |||||||||||| |||     
T  15939658 tgtaactaactttctccatggaaatgagagaaaaggctctagataccatgttatggaaagtaagaaatgaataatagtctca-ttctcatagatggaaat 15939560  T
Q  350 gtgagt 355  Q
    ||||||    
T  15939559 gtgagt 15939554  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 410
Target Start/End: Complemental strand, 3947633 - 3947522
Alignment:
Q  298 tgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttataggcaatatgtaaagtacattaagcct 397  Q
    |||||||||| ||||||  | ||||||  ||||||||||||||||||| |||||   |||||   || ||||||||||| |||||||||||| |||| ||    
T  3947633 tgttatggaatgcaaagtgt-gaaaatgatctcatttctcatagatgtgaaagtagttacattatgtttttataggcaaaatgtaaagtacaataagact 3947535  T
Q  398 aatcacatgctaa 410  Q
    ||  |||||||||    
T  3947534 aagtacatgctaa 3947522  T

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Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 298 - 428
Target Start/End: Complemental strand, 32569656 - 32569526
Alignment:
Q  298 tgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttataggcaatatgtaaagtacattaagcct 397  Q
    |||||||||||| |||  ||||||| ||||||||||||||||||||| ||||| |||||||  | |||||||||| ||| |||||||||||||  | |||    
T  32569656 tgttatggaaagtaaaagatagaaagtagtctcatttctcatagatgaaaaagggagtacaatgtgtatttatagacaaaatgtaaagtacatagaacct 32569557  T
Q  398 aatcacatgctaatctactagattaaactaa 428  Q
    ||||||||||||||  ||||||| |||||||    
T  32569556 aatcacatgctaatacactagatcaaactaa 32569526  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 344
Target Start/End: Original strand, 38629649 - 38629757
Alignment:
Q  234 tgatgaagaatgaaactgtaactaacttccgccatggaaatgggaagaaaaactatagataccatgttatggaaagcaaagaatagaaaatagtctcatt 333  Q
    ||||||||||||||| |||||| ||||| | ||||||||||| |||  ||  || |||||||||||||||| ||||| ||  ||||||||||||||||||    
T  38629649 tgatgaagaatgaaattgtaacaaactttctccatggaaatgagaa--aatgctctagataccatgttatgaaaagctaaagatagaaaatagtctcatt 38629746  T
Q  334 tctcatagatg 344  Q
    |||||||||||    
T  38629747 tctcatagatg 38629757  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 23955450 - 23955380
Alignment:
Q  28 caacaataacataattatgtccttcacttggatgaacgtagaaaacagattcagtattgggttgattttgg 98  Q
    ||||||||||| ||||  | ||||| ||||||||||| |||||||| |||||||| |  ||||||||||||    
T  23955450 caacaataacagaatttggaccttcgcttggatgaacatagaaaacggattcagtgtccggttgattttgg 23955380  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 298 - 428
Target Start/End: Complemental strand, 8754546 - 8754416
Alignment:
Q  298 tgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtac-atagagtatttataggcaatatgtaaagtacattaagcc 396  Q
    ||||||||||||| ||  ||||||||||||||||||||||||||||| |||||  ||||| |||| ||||||||||| ||  | |||||||||  || ||    
T  8754546 tgttatggaaagctaaagatagaaaatagtctcatttctcatagatgaaaaagatagtacaatag-gtatttataggaaaagtataaagtacacaaatcc 8754448  T
Q  397 taatcacatgctaatctactagattaaactaa 428  Q
    |||||||||||||||  |||||||||||||||    
T  8754447 taatcacatgctaatacactagattaaactaa 8754416  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 37673541 - 37673601
Alignment:
Q  298 tgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtaca 358  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  37673541 tgttacggaaagcaagaaatagaaaatagtctcatttctcatagatgtgaaagtgagtaca 37673601  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 15913627 - 15913702
Alignment:
Q  297 atgttatggaaagcaaagaatagaaaatagtctcatttctcatagatgtaaaagtgagtacatagagtatttatag 372  Q
    |||||||||||||  |  ||| ||||||||  |||||| |||||||||| |||| |||||||||||||||||||||    
T  15913627 atgttatggaaagtgagaaatggaaaatagcttcatttgtcatagatgtgaaagagagtacatagagtatttatag 15913702  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 21811104 - 21811155
Alignment:
Q  46 gtccttcacttggatgaacgtagaaaacagattcagtattgggttgattttg 97  Q
    ||||||||||||||||||| |||||||| |||||||| |  |||||||||||    
T  21811104 gtccttcacttggatgaacatagaaaacggattcagtgtccggttgattttg 21811155  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 21811309 - 21811357
Alignment:
Q  260 ttccgccatggaaatgggaagaaaaactatagataccatgttatggaaa 308  Q
    ||||||||||||||||| ||||||| || |||||||||| |||| ||||    
T  21811309 ttccgccatggaaatggaaagaaaagctctagataccatattattgaaa 21811357  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 20854051 - 20854115
Alignment:
Q  48 ccttcacttggatgaacgtagaaaacagattcagtattgggttgattttggcgacgcatgatgaa 112  Q
    |||||||| | |||||||||||||||||||||||| |  ||||||||||||||| ||||| ||||    
T  20854051 ccttcactcgaatgaacgtagaaaacagattcagtgtccggttgattttggcgaggcatggtgaa 20854115  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 34065035 - 34064987
Alignment:
Q  46 gtccttcacttggatgaacgtagaaaacagattcagtattgggttgatt 94  Q
    ||||||| ||||||||||||||||| || ||||||||||  ||||||||    
T  34065035 gtccttcgcttggatgaacgtagaacacggattcagtatcaggttgatt 34064987  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Complemental strand, 16984847 - 16984796
Alignment:
Q  46 gtccttcacttggatgaacgtagaaaacagattcagtattgggttgattttg 97  Q
    ||||||||||||||||||| |||||||| |||||||| |  |||||||||||    
T  16984847 gtccttcacttggatgaacatagaaaacggattcagtgtccggttgattttg 16984796  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 16984642 - 16984594
Alignment:
Q  260 ttccgccatggaaatgggaagaaaaactatagataccatgttatggaaa 308  Q
    ||||||||||||||||| ||||||| || |||||||||| |||| ||||    
T  16984642 ttccgccatggaaatggaaagaaaagctctagataccatattattgaaa 16984594  T

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