View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1540_low_8 (Length: 404)

Name: NF1540_low_8
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1540_low_8
NF1540_low_8
[»] chr8 (1 HSPs)
chr8 (29-93)||(9444005-9444069)
[»] chr6 (2 HSPs)
chr6 (29-93)||(27878622-27878686)
chr6 (29-93)||(30967748-30967812)
[»] chr5 (3 HSPs)
chr5 (29-93)||(41718750-41718814)
chr5 (270-363)||(33811019-33811112)
chr5 (270-363)||(33815937-33816030)
[»] chr4 (3 HSPs)
chr4 (29-93)||(30950096-30950160)
chr4 (29-93)||(42266243-42266307)
chr4 (29-93)||(48701734-48701798)
[»] chr3 (2 HSPs)
chr3 (29-93)||(5823188-5823252)
chr3 (29-93)||(2817176-2817240)
[»] chr7 (2 HSPs)
chr7 (29-93)||(25441099-25441163)
chr7 (270-360)||(4836354-4836444)
[»] chr2 (1 HSPs)
chr2 (29-93)||(825819-825883)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 9444005 - 9444069
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444005 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 9444069  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 27878622 - 27878686
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878622 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 27878686  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 30967812 - 30967748
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  30967812 accacagagcatactaagatttttcttaccacaccactagtttatcgcagcggaataacagctac 30967748  T

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Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 41718814 - 41718750
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718814 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 41718750  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 33811019 - 33811112
Alignment:
Q  270 tctattgtgacagtcaaagtgcaatagaccttagcaagaactctatgtaccatgcaaggaccaaacacattgatgtgagatatcattggattcg 363  Q
    |||||||||| ||||||||||||||  |||| |||||||| || |  |||||| ||||| | |||||||| |||||||| ||||||||||||||    
T  33811019 tctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcg 33811112  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 33815937 - 33816030
Alignment:
Q  270 tctattgtgacagtcaaagtgcaatagaccttagcaagaactctatgtaccatgcaaggaccaaacacattgatgtgagatatcattggattcg 363  Q
    |||||||||| ||||||||||||||  |||| |||||||| || |  |||||| ||||| | |||||||| |||||||| ||||||||||||||    
T  33815937 tctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcg 33816030  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 30950096 - 30950160
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950096 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 30950160  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 42266307 - 42266243
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266307 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 42266243  T

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Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 48701734 - 48701798
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701734 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 48701798  T

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Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 5823188 - 5823252
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823188 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 5823252  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 2817176 - 2817240
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    |||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||||    
T  2817176 accacatagcatactaagatttttcttaccacaccactagtttattactgcggaataacaactac 2817240  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 25441163 - 25441099
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25441163 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacaactac 25441099  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 360
Target Start/End: Complemental strand, 4836444 - 4836354
Alignment:
Q  270 tctattgtgacagtcaaagtgcaatagaccttagcaagaactctatgtaccatgcaaggaccaaacacattgatgtgagatatcattggat 360  Q
    |||||||||| ||||||||||||||  |||| |||||||| || |  |||||| ||||| | |||||||| |||||||| |||||||||||    
T  4836444 tctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggat 4836354  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 825883 - 825819
Alignment:
Q  29 accacagagcatactaagatttttcttaccactccactagtttatcacagcggaataacagctac 93  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  825883 accacagagcatactaagatttttcttaccacttcactagtttatcacagcggaataacagctac 825819  T

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