View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1540_low_9 (Length: 380)
Name: NF1540_low_9
Description: NF1540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1540_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 30 - 373
Target Start/End: Complemental strand, 33918796 - 33918461
Alignment:
| Q |
30 |
ctagatgcttcctaaaaggaatgactgatcacactaagaacctcatccttgatcctcggaaacaccgacacttcagaatatctctcaaccagagatgcta |
129 |
Q |
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| T |
33918796 |
ctagatgcttcctaaaaggaatgactgatcacactaagaacctcatccttg-------gaaacaccgacacttcagaatatctctcaaccagagatgcta |
33918704 |
T |
|
| Q |
130 |
ctggccatggatctcacacagcttcaacatcagctggatattttgtaaaaaatgcaaattattgaggacttgcttgcttctggtttagcaagaggaggag |
229 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
33918703 |
ctggccatggatctcacacagcttcaacat-agctggatattttgtaaaaaatgcaaattatagaggacttgcttacttctggtttagcaagaggaggag |
33918605 |
T |
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| Q |
230 |
ctaccttagctcatttggctatctacaaagcttgctgggacgttcctgttggacggtgctgatatcctcaaagcatttgacatggcaatacatgatggtg |
329 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33918604 |
ctgccttagctcatttggctatctacaaagcttgctgggacgttcctgttggacgatgctgatatcctcaaagcatttgacatggctatacatgatggtg |
33918505 |
T |
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| Q |
330 |
tagatatctcagctgtttctcttggcattagcattcctttgttt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918504 |
tagatatctcagctgtttctcttggcattagcattcctttgttt |
33918461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 30 - 373
Target Start/End: Original strand, 35082613 - 35082953
Alignment:
| Q |
30 |
ctagatgcttcctaaaaggaatgactgatcacactaagaacctcatccttgatcctcggaaacaccgacacttcagaatatctctcaaccagagatgcta |
129 |
Q |
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||||||| |||||||||||||| ||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||| | |||||||||| |
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| T |
35082613 |
ctagatggttcctaaaaggaataactgatcacactaagaacctcgtccttg-------gaaacaatgacactacagaatatctctcagctagagatgcta |
35082705 |
T |
|
| Q |
130 |
ctggccatggatctcacacagcttcaacatcagctggatattttgtaaaaaatgcaaattattgaggacttgcttgcttctggtttagcaagaggaggag |
229 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
35082706 |
ttggccatggaactcacacagcttcaacagcagctggatattttgtagaaaatgcaaattatagagg----ccttgcttctggtttagcaagaggaggag |
35082801 |
T |
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| Q |
230 |
ctaccttagctcatttggctatctacaaagcttgctgggacgttcctgttggac--------ggtgctgatatcctcaaagcatttgacatggcaataca |
321 |
Q |
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| | |||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| |
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| T |
35082802 |
cacctttagctcacttggctatctacaaagcttgctgggacgttcctgttggacactgtactgatgctgatatcctcaaagcatttgacatggctataca |
35082901 |
T |
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| Q |
322 |
tgatggtgtagatatctcagctgtttctcttggcattagcattcctttgttt |
373 |
Q |
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|||||||||||| ||| | ||||||||||||||||| |||||||||||||| |
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| T |
35082902 |
cgatggtgtagatgtcttaactgtttctcttggcattggcattcctttgttt |
35082953 |
T |
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