View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15410_high_3 (Length: 496)
Name: NF15410_high_3
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15410_high_3 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 14 - 489
Target Start/End: Original strand, 23125762 - 23126237
Alignment:
| Q |
14 |
gaggagcacaaaattgtcaagacactatacagagtgaaaccacactattaaatttcaaagtatgtatctttacaattccatttccccatcattgaacatt |
113 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23125762 |
gaggagaacaaaattgtcaagacactatacagagtgaaaccacactattaaatttcaaagtatgtatctttacaattccatttccccatcattgaacatt |
23125861 |
T |
|
| Q |
114 |
aattgaattaatattaaagatggaaaaagcagggtgcgttgaatactaggaattcatggccttattatgctttatgagaacaaggggaaatttgtagaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23125862 |
aattgaattaatattaaagatggaaaaagcagggtgcgttgaatactaggaattcatggccttattatgctttatgagaacaaggggaaatttgtagaac |
23125961 |
T |
|
| Q |
214 |
aatcaagaagaagaatgagattacaaacaaccacaattaaaagcttatgaaaaggaagagaaaggaacacttgcatacacgtattccnnnnnnngttgaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23125962 |
aatcaagaagaagaatgagattacaaacaaccacaattaaaagcttatgaaaaggaagagaaaggaacacttgcatacacgtattcctttttttgttgaa |
23126061 |
T |
|
| Q |
314 |
gagaaaggaagagattacaaaattatctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccggcgaaaagtatcaatgtgc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23126062 |
gagaaaggaagagattacaaaattatctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccggcgaaaagtatcaatgtgc |
23126161 |
T |
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| Q |
414 |
atcaaggttctaccattaatcaagaagaaagtattcaaaatgattttctatttcatattgtgatcaagtataatct |
489 |
Q |
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| T |
23126162 |
atcaaggttctaccattaatcaagaagaaagtattcaaaatgattttctatttcatattatgatcaagtataatct |
23126237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 18694195 - 18693876
Alignment:
| Q |
15 |
aggagcacaaaattgtcaagacactatacagagtgaaaccacactattaaatttcaaagtatgtatctttacaattccatttccccatcattgaacatta |
114 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18694195 |
aggagaacaaaattgtcaagacactatacagagtgaaaccacactattaaatttcaaagtatgtatctttacaattccatttccccatcattgaacgtta |
18694096 |
T |
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| Q |
115 |
attgaattaatattaaagatggaaaaagcagggtgcgttgaatactaggaattcatggccttattatgctttatgagaacaaggggaaatttgtagaaca |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18694095 |
attgaattaatattaaagatggaaaaagcatggtgcattgaatactaggaattcatggccttattatgctttatgagaacaaggggaaatttgtagaaca |
18693996 |
T |
|
| Q |
215 |
atcaagaagaagaatgagattacaaacaaccacaattaaaagcttatgaaaaggaagagaaaggaacacttgcatacacgtattccnnnnnnngttgaag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |
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| T |
18693995 |
atcaagaagaagaatgagattacaaacaaccacaattaaaagcttatgaaaaggaagagaaatgaatacttgcatacacgtattcctttttttgttgaag |
18693896 |
T |
|
| Q |
315 |
agaaaggaagagattacaaa |
334 |
Q |
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|||||||||||||||||||| |
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| T |
18693895 |
agaaaggaagagattacaaa |
18693876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 346 - 489
Target Start/End: Complemental strand, 18701270 - 18701127
Alignment:
| Q |
346 |
tgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaagaagaaagt |
445 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18701270 |
tgaggaagagaaatgagaaaaggggatggtttgtcgtccttggccaccggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaagaagaaagt |
18701171 |
T |
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| Q |
446 |
attcaaaatgattttctatttcatattgtgatcaagtataatct |
489 |
Q |
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| T |
18701170 |
gttcaaaatgattttctatttcatactatgatcaagtataatct |
18701127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 280
Target Start/End: Complemental strand, 13089 - 12823
Alignment:
| Q |
14 |
gaggagcacaaaattgtcaagacactatacagagtgaaaccacactattaaatttcaaagtatgtatctttacaattccatttccccatcattgaacatt |
113 |
Q |
| |
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|||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
13089 |
gaggagaacaaaattatcaagacactatacatagggaaaccacactattaaatttcaaagtatgtatctttacaattccatttccccatcattgattgtt |
12990 |
T |
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| Q |
114 |
aattgaattaatattaaagatggaaaaagcagggtgcgttgaatactaggaattcatggccttattatgctttatgagaacaaggggaaatttgtagaac |
213 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12989 |
aattgaattaatattaaagatggaaaaagcatggtacgttgaatactaggaattcatggccttattatgctttatgagaacaaggggaactttgtagaac |
12890 |
T |
|
| Q |
214 |
aatcaagaagaagaatgagattacaaacaaccacaattaaaagcttatgaaaaggaagagaaaggaa |
280 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
12889 |
aatcatgaagaagaatgagattacaagcaaccacaattaaaagcttatgaaaaggaagagaaaggaa |
12823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 339 - 489
Target Start/End: Original strand, 40801755 - 40801905
Alignment:
| Q |
339 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801755 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtcattggccatcggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
40801854 |
T |
|
| Q |
439 |
agaaagtattcaaaatgattttctatttcatattgtgatcaagtataatct |
489 |
Q |
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| ||||| |||||||||||||||||||||||| | |||||||||||||||| |
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| T |
40801855 |
aaaaagtgttcaaaatgattttctatttcatactatgatcaagtataatct |
40801905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 43805908 - 43806067
Alignment:
| Q |
16 |
ggagcacaaaattgtcaagacactatacagagtgaaaccacactattaaatttcaaagtatgtatctttacaattccatttccccatcattgaacattaa |
115 |
Q |
| |
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|||| |||||||| |||| || |||||||||| ||| | || |||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| |
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| T |
43805908 |
ggagaacaaaattttcaaaacgctatacagagggaaccaac-ctattaaatttcaaagtatgcatatttacaattccatttctccatcattgaacattaa |
43806006 |
T |
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| Q |
116 |
ttgaattaatattaaagatggaaaaagcagggtgcgttgaatactaggaattcatggcctt |
176 |
Q |
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||||||||||||||||||||||||||||| |||| ||||| ||||| ||||| ||||||| |
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| T |
43806007 |
ttgaattaatattaaagatggaaaaagcatggtgtgttgactactacaaattcgtggcctt |
43806067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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