View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15410_low_1 (Length: 582)
Name: NF15410_low_1
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15410_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 11 - 566
Target Start/End: Original strand, 3892156 - 3892710
Alignment:
| Q |
11 |
agataatactaatcaattaaatttttatctatggatatacgttagttacataatcatgaaaaaagcactgtgatatataaaaacagttacgtgaagactc |
110 |
Q |
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| T |
3892156 |
agataatactaatcaattaaatttttatctatggatatacgttagttacataatcatgaaaaaagcactgtgatatataaaaacagttacgtgaagactc |
3892255 |
T |
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| Q |
111 |
aatattggtgaagtgttcctggtcaagtttcaagaagaacaaaattaaaattaacctcacaaaaaagtgtaaaacgacaagttttgaaacatgccacggt |
210 |
Q |
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| T |
3892256 |
aatattggtgaagtgttcctggtcaagtttcaagaagaacaaaattaaaattaaactcacaaaaaagtgtaaaacgacaagttttgaaacatgccacggt |
3892355 |
T |
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| Q |
211 |
tctttgaatcctaaaaagaaatctagtatttaaggagttatgttcctcacacacaacactgtcttttcttaacaacctcaaattcctcaaaaatctttct |
310 |
Q |
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| T |
3892356 |
tctttgaatcctaaaaagaaatctagtatttaaggagttatgttcctcacacacaacactgtcttttcttaacaacctcaaattcctcaaaaatctttct |
3892455 |
T |
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| Q |
311 |
ctcttcattctttcttttcacttatcttctaatcatttacacacattcttagtaaaattatttgtaaccaacaaaaaatattcttctttatccttatcta |
410 |
Q |
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| T |
3892456 |
ctcttcattctttcttttcacttatcttctaatcatttacacacattcttagtaaaattatttgtaaccaacaaaaaatattcttctttatccttatcta |
3892555 |
T |
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| Q |
411 |
atcttcttgaaaggtttgtattaaagnnnnnnnatttgagttaaaaaattcatgtattaataatattttttctaaattcatgttgattgatttctttgtt |
510 |
Q |
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| T |
3892556 |
atcttcttgaaaggtttgtattaaagtttttttatttgagttaaaaaattcatgtattaataata-tttttctaaattcatgttgattgatttctttgtt |
3892654 |
T |
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| Q |
511 |
tgtttttgttgttataatcacaaattgaaattaatgggatttttatgtttaacttg |
566 |
Q |
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| T |
3892655 |
tggtcttgttgttataatcacaaattgaaattaatgggatttttatgtttaacttg |
3892710 |
T |
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