View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15410_low_13 (Length: 292)
Name: NF15410_low_13
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15410_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 8295082 - 8295304
Alignment:
| Q |
7 |
gaggagcagagatgaagacaattttgccatctatttcttaagtgccaaggaacgatcgtgatagacttgaaagctgcagttaccaacatagaatctgttt |
106 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8295082 |
gaggagcagagatgaaaacaattttgccatctatttcttaagtgccaaggaacgatcgtgatagacttgaaagctgcagttaccaacatagaatctgttt |
8295181 |
T |
|
| Q |
107 |
ctagccaaaggtgatgccaccccttttgagaagcaaattcaattgccatcatggctccattaagctcagcgattaaagagtttgatatccccaagttgca |
206 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
8295182 |
ctagccaaaggtgatgccaccccttttgagaagcgaattcaattgccatcatggctccattaagctcggcgatcaaagagtttgatatccccaagttgca |
8295281 |
T |
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| Q |
207 |
cgcaaaagctcccacaaactcag |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
8295282 |
cgcaaaagctcccacaaactcag |
8295304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 27727717 - 27727500
Alignment:
| Q |
7 |
gaggagcagagatgaagacaattttgccatctatttcttaagtgccaaggaacgatcgtgatagacttgaaagctgcagttaccaacatagaatctgttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27727717 |
gaggagcagagatgaagacaattttgccatctatttcttaagtgccaaagaacgatcgtgatagacttgaaagctgcagttaccaacatagaatctgttt |
27727618 |
T |
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| Q |
107 |
ctagccaaaggtgatgccaccccttttgagaagcaaattcaattgccatcatggctccattaagctcagcgattaaagagtttgatatccccaagttgca |
206 |
Q |
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| T |
27727617 |
ctagccaaaggtgatgccaccccttttgagaagcgaattcaattgccatcatggctccattaagctcagcaatcaaagagtttgatatccccaagttgca |
27727518 |
T |
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| Q |
207 |
cgcaaaagctcccacaaa |
224 |
Q |
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|||||||||||||||||| |
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| T |
27727517 |
cgcaaaagctcccacaaa |
27727500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 22162252 - 22162474
Alignment:
| Q |
7 |
gaggagcagagatgaagacaattttgccatctatttcttaagtgccaaggaacgatcgtgatagacttgaaagctgcagttaccaacatagaatctgttt |
106 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22162252 |
gaggagcagagatgaatacaattttgccatctatttcttaagtgccaaggaacgatcgtgatagacttgaaagctgcagttaccaacatagaatctgttt |
22162351 |
T |
|
| Q |
107 |
ctagccaaaggtgatgccaccccttttgagaagcaaattcaattgccatcatggctccattaagctcagcgattaaagagtttgatatccccaagttgca |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |
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| T |
22162352 |
ctagccaaaggtgatgccaccccttttgagaagcgaattcaattgccatcatggctccattaagctctgcgatcaaagagtttgatatccccaagtttca |
22162451 |
T |
|
| Q |
207 |
cgcaaaagctcccacaaactcag |
229 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
22162452 |
cgcaaaagctcccacaaactcag |
22162474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 24812969 - 24813092
Alignment:
| Q |
97 |
gaatctgtttctagccaaaggtgatgccaccccttttgagaagcaaattcaattgccatcatggctccattaagctcagcgattaaagagtttgatatcc |
196 |
Q |
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|
||||| ||||||| |||||| || | ||| || |||| |||||||| ||||||||| | ||| || ||||| | ||||| ||||||||||| ||||||| |
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| T |
24812969 |
gaatcagtttctaaccaaagttggttccaaccttttttagaagcaatttcaattgcaagcatagcaccatttaattcagcaattaaagagttggatatcc |
24813068 |
T |
|
| Q |
197 |
ccaagttgcacgcaaaagctccca |
220 |
Q |
| |
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| | |||||||| ||||||||||| |
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| T |
24813069 |
ctaggttgcacgtaaaagctccca |
24813092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 12035162 - 12035250
Alignment:
| Q |
127 |
cccttttgagaagcaaattcaattgccatcatggctccattaagctcagcgattaaagagtttgatatccccaagttgcacgcaaaagc |
215 |
Q |
| |
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|||||||||||||||| ||| ||||| | ||| || ||||| |||||| | ||||||| ||||||||||| || ||||| |||||||| |
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| T |
12035162 |
cccttttgagaagcaatttcgattgcaaacattgcaccatttagctcaacacttaaagaatttgatatccctaaattgcaagcaaaagc |
12035250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 12032987 - 12033040
Alignment:
| Q |
28 |
ttttgccatctatttcttaagtgccaaggaacgatcgtgatagacttgaaagct |
81 |
Q |
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|||||||| |||||||||| |||||||||||| || |||| |||||||||||| |
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| T |
12032987 |
ttttgccacctatttcttaggtgccaaggaacaattttgatcgacttgaaagct |
12033040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 14636700 - 14636647
Alignment:
| Q |
28 |
ttttgccatctatttcttaagtgccaaggaacgatcgtgatagacttgaaagct |
81 |
Q |
| |
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|||||||| |||||||||| |||||||||||| || |||| |||||||||||| |
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| T |
14636700 |
ttttgccacctatttcttaggtgccaaggaacaattttgatcgacttgaaagct |
14636647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 6642979 - 6642942
Alignment:
| Q |
22 |
agacaattttgccatctatttcttaagtgccaaggaac |
59 |
Q |
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|||||||||| ||||||||||||||| ||||||||||| |
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| T |
6642979 |
agacaattttcccatctatttcttaactgccaaggaac |
6642942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 18621168 - 18621127
Alignment:
| Q |
84 |
agttaccaacatagaatctgtttctagccaaaggtgatgcca |
125 |
Q |
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|||||||||||| ||||| |||||||||||| |||||||||| |
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| T |
18621168 |
agttaccaacatggaatccgtttctagccaatggtgatgcca |
18621127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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