View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15410_low_15 (Length: 273)
Name: NF15410_low_15
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15410_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 27976999 - 27976742
Alignment:
| Q |
1 |
tgtttagaatgtgaatgtccttcggatttgttgttttcctttattgtccttagttctacttttaagtcctgtattgagttttgaaacttttgaatctgat |
100 |
Q |
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| T |
27976999 |
tgtttagaatgtgaatgtccttcggatttgttgttttcctttattgtccttagttctacttttaagtcttgtattgagttttgaaacttttgaatctgat |
27976900 |
T |
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| Q |
101 |
gaactgatgtgctaaatctcagccaaaactcgagattttcctcgaggaggtcgtcaaggtctgaacggaatttcttttctaaattcgaaaggttttgccg |
200 |
Q |
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| T |
27976899 |
gaactgatgtgctaaatcttagccaaaactcgagattttcctcgaggaggtcgtcaaggtctgaacggaatttcttttctaaatccgaaaggttttgccg |
27976800 |
T |
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| Q |
201 |
cttatcttggtcagccatgagcttctcaagggttctaaggccatgggctgatgagttt |
258 |
Q |
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| T |
27976799 |
cttatcttggtcagccatgagcttctcaagggttctaaggccatgggctgatgagttt |
27976742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 28306709 - 28306647
Alignment:
| Q |
45 |
tgtccttagttctacttttaagtcctgtattgagttttgaaacttttgaatctgatgaactga |
107 |
Q |
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| T |
28306709 |
tgtccttagttctgaatttaagtcctaaattgagttttgaaacttttgaatctgattaactga |
28306647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 46039829 - 46039911
Alignment:
| Q |
39 |
ctttattgtccttagttctacttttaagtcctgtattgagttttgaaacttttgaatctgatgaactgatgtgctaaatctca |
121 |
Q |
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| T |
46039829 |
ctttatttttcttagttctacttttaagtcctgtaaagattgttggaacttttgaatttgatgaactgaagtgctaaacctca |
46039911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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