View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15410_low_16 (Length: 270)
Name: NF15410_low_16
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15410_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 31 - 245
Target Start/End: Complemental strand, 29082682 - 29082469
Alignment:
| Q |
31 |
aattctcatccttagcagatctctaatagcatgttaaattagtttggatctaactctccaaaactagtgcaaaagatgaaagtattcaaacacatatata |
130 |
Q |
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| T |
29082682 |
aattctcatccttagcagatctctaatagcatgttaaattagtttggatctaactctccaaaactagtgcaaaagatgaaagtattcaaacacatatata |
29082583 |
T |
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| Q |
131 |
ccgaacaaccaaaaaactatgaaaatgtgaaactaccaacttaacattatttctannnnnnnnggtataaagagagggcaaagcccaaaagagaaaagga |
230 |
Q |
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| T |
29082582 |
ccgaacaaccaaaaaactatgaaaatgtgaaactaccaacttaacattattttta-ttgttttggtataaagagagggcaaagcccaaaagagaaaagga |
29082484 |
T |
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| Q |
231 |
aaattacgaaattaa |
245 |
Q |
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||||||| ||||||| |
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| T |
29082483 |
aaattacaaaattaa |
29082469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 18754654 - 18754715
Alignment:
| Q |
194 |
ggtataaagagagggcaaagcccaaaagag-aaaaggaaaattacgaaattaaacgaatatt |
254 |
Q |
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| T |
18754654 |
ggtacaaagagagggtaaagcccaaaagagaaaaagaaaaattacgaaattaaacgaatatt |
18754715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 1616436 - 1616374
Alignment:
| Q |
194 |
ggtataaagagagggcaaagcccaaaagagaaaa--ggaaaattacgaaattaaacgaatatt |
254 |
Q |
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| T |
1616436 |
ggtacaaagagagggtaaaacccaaaagagaaaaaagaaaaattacgaaattaaacgaatatt |
1616374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 31249710 - 31249756
Alignment:
| Q |
203 |
agagggcaaagcccaaaagagaaaaggaaaattacgaaattaaacgaa |
250 |
Q |
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| T |
31249710 |
agagggcaaagaccaaa-gagaaaaggaaaattacaaaattaaacgaa |
31249756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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