View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15410_low_17 (Length: 264)
Name: NF15410_low_17
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15410_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 248
Target Start/End: Original strand, 25802664 - 25802898
Alignment:
| Q |
14 |
agtgagatgaaaattgcaaatttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctca |
113 |
Q |
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| T |
25802664 |
agtgagatgaaaattgcaattttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagtatacaactccatctca |
25802763 |
T |
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| Q |
114 |
tgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaacc |
213 |
Q |
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| T |
25802764 |
tgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaacc |
25802863 |
T |
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| Q |
214 |
ctatcaattccggatcctcagccaatgcacctttt |
248 |
Q |
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| T |
25802864 |
ctatcaattccggatcctcagccaatgctcctttt |
25802898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 23922262 - 23922432
Alignment:
| Q |
34 |
tttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatgga |
133 |
Q |
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| T |
23922262 |
tttattcatgaaatataaatttatttatttatagatggcctccggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggc |
23922361 |
T |
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| Q |
134 |
agaaatattaacaatcttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttga |
204 |
Q |
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| T |
23922362 |
agacgtattaacattcttttcacgagctaagctatcttcacacctaccaagtgcatcactagcatatttga |
23922432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 167
Target Start/End: Original strand, 23914625 - 23914758
Alignment:
| Q |
34 |
tttattcattcaatataaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatgga |
133 |
Q |
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| T |
23914625 |
tttattcatgaaatataaattaatttatttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggc |
23914724 |
T |
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| Q |
134 |
agaaatattaacaatcttttcattagctaagcta |
167 |
Q |
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| T |
23914725 |
agacgtattaacattcttttcacgagctaagcta |
23914758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 24435842 - 24435898
Alignment:
| Q |
120 |
agtgtagcaatggaagaaatattaacaatcttttcattagctaagctacgttcgcac |
176 |
Q |
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| T |
24435842 |
agtgtagaaagggaagaagtattaacaatcttttcattaactaagctatgttcgcac |
24435898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 64 - 246
Target Start/End: Original strand, 35079337 - 35079519
Alignment:
| Q |
64 |
atagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaa |
163 |
Q |
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||||||| ||||| ||||| ||||||||||| | ||||||| |||||||||||||| || ||||||||||||| |||||||||||||||| ||||| || |
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| T |
35079337 |
atagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagcaatggaagaagtattaacaatcttttcgttagccaa |
35079436 |
T |
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| Q |
164 |
gctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctcagccaatgcacctt |
246 |
Q |
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| T |
35079437 |
gctacgttcacacatgtcaagtgcatcgctagcatatttgacagccaagcttatcatttccggatcctcgcgcaatgcacctt |
35079519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 49 - 246
Target Start/End: Original strand, 35074353 - 35074550
Alignment:
| Q |
49 |
taaattttttgattcatagatgacctccagctatcactacaatatcagcatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaat |
148 |
Q |
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||||||| || ||| ||||||| ||||| |||||||||||||||| | || |||| ||| ||||||||||||| | ||||||||||| |||| ||||| |
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| T |
35074353 |
taaatttattaatttatagatggcctccggctatcactacaatatttgtgtataacttcatgtcatgattcagtgcaacaatggaagaagtattgacaat |
35074452 |
T |
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| Q |
149 |
cttttcattagctaagctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctcagccaatgcacctt |
246 |
Q |
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| T |
35074453 |
cttttcatcagccaagctacgttcacacatgtcaagtgcatcgctagcataattgacagccatgcttatcatttccggatcctcacgcaatgcacctt |
35074550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 13436259 - 13436196
Alignment:
| Q |
105 |
tccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaagctac |
168 |
Q |
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| T |
13436259 |
tccatctcactattcattgtagaaatggaagaaatattaaaaatcttttcattaactaagctac |
13436196 |
T |
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