View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15410_low_22 (Length: 240)
Name: NF15410_low_22
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15410_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 9949970 - 9950189
Alignment:
| Q |
1 |
acattaattagtctttcaatcctatttctgcaggatcagtacctggctttgcaccaatagcaaaaaactcgataataacttccaaaggcataccctttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9949970 |
acattaattagtctttcaatcctatttctgcaggatcagtacctggctttgcaccaatagcaaaaaactcgataataacttccaaaggcataccctttgt |
9950069 |
T |
|
| Q |
101 |
ttctggaactttcaagtagacaaatatccatgaaatgatgcagccaccaacaaatagagcgaagactccgctaagaccgagcagttggagcaaataaggg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9950070 |
ttctggaactttcaagtagacaaatatccatgaaatgatgcagccaccaacaaatagagcgaagactccgctaagaccaagcagttggagcaaataaggg |
9950169 |
T |
|
| Q |
201 |
aatgtcaaagtgacggccaa |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
9950170 |
aatgtcaaagtgacggccaa |
9950189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 19693381 - 19693594
Alignment:
| Q |
1 |
acattaattagtctttcaatcctatttctgcaggatcagtacctggctttgcaccaatagcaaaaaactcgataataacttccaaaggcataccctttgt |
100 |
Q |
| |
|
|||||||||| |||| || ||| | |||||||||||||||||| ||||||||||| || ||||||||||| |||||| |||||||||||| |||||||| |
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| T |
19693381 |
acattaattaatcttccattccaaattctgcaggatcagtaccaggctttgcaccgattgcaaaaaactcagtaataatttccaaaggcatgccctttgt |
19693480 |
T |
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| Q |
101 |
ttctggaactttcaagtagacaaatatccatgaaatgatgcagccaccaacaaatagagcgaagactccgctaagaccgagcagttggagcaaataaggg |
200 |
Q |
| |
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||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||| |||||| |||| |||| ||| |||||||||||||||||| |
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| T |
19693481 |
ttcaggaacttttaagtaaacaaatatccatgaactgatgcagccaccaacaaatagagagaagacaccgccgagactgagaagttggagcaaataaggg |
19693580 |
T |
|
| Q |
201 |
aatgtcaaagtgac |
214 |
Q |
| |
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|||||||| ||||| |
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| T |
19693581 |
aatgtcaatgtgac |
19693594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 30892401 - 30892290
Alignment:
| Q |
43 |
ctggctttgcaccaatagcaaaaaactcgataataacttccaaaggcataccctttgtttctggaactttcaagtagacaaatatccatgaaatgatgca |
142 |
Q |
| |
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|||| |||| ||||| |||||| ||||| || |||||||| ||||||||||| || ||||| |||||||||||||| ||||| ||||| |||| ||||| |
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| T |
30892401 |
ctggttttgaaccaaaagcaaagaactcaatgataacttctaaaggcatacctttagtttcaggaactttcaagtaaacaaaaatccaagaaacaatgca |
30892302 |
T |
|
| Q |
143 |
gccaccaacaaa |
154 |
Q |
| |
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||| ||||||| |
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|
| T |
30892301 |
accaacaacaaa |
30892290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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