View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15410_low_24 (Length: 221)
Name: NF15410_low_24
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15410_low_24 |
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| [»] scaffold0164 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 23125663 - 23125458
Alignment:
| Q |
1 |
gtcatcaaattgcttaaaagaaaccaaccttttcagttatgtgtaaaccaacctttgcaatctcctctattctttgtatgtgcgggtgtcaattgtgttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23125663 |
gtcatcaaattgcttaaaagaaaccaaccttttcagttatgtgtaaaccaacctttgcaatctcctctattctttgtatgtgcgggtgtcaattgtgttg |
23125564 |
T |
|
| Q |
101 |
tttttgtgaagggatcagttaccctttttcttctaagtggttggtgaagaaataaattactaaattatatgcggttactttttaaacattaaagaaagtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23125563 |
tttttgtgaagggatcagttaccctttttcttctaagtggttggtgaagacataaattactaaattatatgcggttactttttaaacattaaagaaagtg |
23125464 |
T |
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| Q |
201 |
aagagt |
206 |
Q |
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|||||| |
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| T |
23125463 |
aagagt |
23125458 |
T |
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Back To:
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Target: chr6 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 18694296 - 18694495
Alignment:
| Q |
2 |
tcatcaaattgcttaaaagaaaccaaccttttcagttatgtgtaaaccaacctttgcaatctcctctattctttgtatgtgcgggtgtcaattgtgttgt |
101 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
18694296 |
tcatgaaattgcttaaaagaaaccaaccttttcagttatgtgtaaaccaacctttgcaatctcctctattctttgtatgtgtggttgtcaattgtgttgt |
18694395 |
T |
|
| Q |
102 |
ttttgtgaagggatcagttaccctttttcttctaagtggttggtgaagaaataaattactaaattatatgcggttactttttaaacattaaagaaagtga |
201 |
Q |
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| T |
18694396 |
ttttgtgaaggaatcagttaccc--tttcttctaagtggttggtgaagacataaattactaaattatatgcggttactttttaaacattaaagaaagtga |
18694493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0164 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0164
Description:
Target: scaffold0164; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 13189 - 13287
Alignment:
| Q |
2 |
tcatcaaattgcttaaaagaaaccaaccttttcagttatgtgtaaaccaacctttgcaatctcctctattctttgtatgtgcgggtgtcaattgtgttg |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||| |
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| T |
13189 |
tcatgaaattgcttaaaagaaaccaaccttttcagttatgtgtaaaccaacctttgcgatgtcctctattctttgcatgtgcggttgtcaattgtgttg |
13287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 43805821 - 43805711
Alignment:
| Q |
8 |
aattgcttaaaagaaaccaaccttttcagttatgtgt--aaaccaacctttgcaatctcctctattctttgtatgtgcgggtgtcaattgtgttgttttt |
105 |
Q |
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||||||||| ||||||||||||||| |||||||||| || ||||| ||||||||||| | ||||||||||||||||| ||||| ||||||||||||| |
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| T |
43805821 |
aattgcttataagaaaccaacctttgtagttatgtgtttaagccaacatttgcaatctcttatattctttgtatgtgcgattgtcagttgtgttgttttt |
43805722 |
T |
|
| Q |
106 |
gtgaagggatc |
116 |
Q |
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||||||||||| |
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| T |
43805721 |
gtgaagggatc |
43805711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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