View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15410_low_3 (Length: 568)

Name: NF15410_low_3
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15410_low_3
NF15410_low_3
[»] chr8 (14 HSPs)
chr8 (227-568)||(7956378-7956717)
chr8 (65-190)||(7956758-7956883)
chr8 (430-568)||(17722458-17722596)
chr8 (430-568)||(44223365-44223503)
chr8 (430-566)||(3767696-3767832)
chr8 (434-566)||(34760846-34760979)
chr8 (429-568)||(35948826-35948975)
chr8 (429-568)||(9040426-9040560)
chr8 (19-70)||(7956934-7956985)
chr8 (434-507)||(20860427-20860500)
chr8 (430-556)||(25456182-25456308)
chr8 (226-266)||(7956644-7956684)
chr8 (481-557)||(16570911-16570987)
chr8 (474-566)||(32321853-32321945)
[»] chr1 (13 HSPs)
chr1 (432-568)||(25785763-25785899)
chr1 (429-566)||(16584904-16585051)
chr1 (429-568)||(11619933-11620066)
chr1 (434-568)||(8083990-8084135)
chr1 (473-568)||(1161471-1161565)
chr1 (473-568)||(42010007-42010102)
chr1 (432-566)||(18461120-18461255)
chr1 (481-566)||(11911646-11911731)
chr1 (262-304)||(34148499-34148541)
chr1 (434-482)||(32678554-32678602)
chr1 (430-505)||(4919491-4919566)
chr1 (430-463)||(33857601-33857634)
chr1 (430-463)||(33923289-33923322)
[»] chr4 (9 HSPs)
chr4 (429-568)||(23107949-23108098)
chr4 (481-568)||(4413515-4413602)
chr4 (473-568)||(24466353-24466448)
chr4 (473-568)||(28319328-28319423)
chr4 (430-566)||(42141257-42141394)
chr4 (435-510)||(13207472-13207547)
chr4 (434-557)||(53393204-53393337)
chr4 (473-542)||(8606196-8606265)
chr4 (430-479)||(39839104-39839153)
[»] chr7 (8 HSPs)
chr7 (430-568)||(39695087-39695230)
chr7 (430-568)||(46993258-46993396)
chr7 (430-568)||(7994955-7995093)
chr7 (430-568)||(7352407-7352555)
chr7 (430-480)||(3997078-3997128)
chr7 (430-483)||(27227036-27227089)
chr7 (475-568)||(11727366-11727449)
chr7 (481-557)||(25545256-25545332)
[»] chr5 (5 HSPs)
chr5 (430-566)||(31895896-31896042)
chr5 (430-568)||(16746578-16746726)
chr5 (479-568)||(16746459-16746548)
chr5 (473-568)||(19947761-19947856)
chr5 (440-498)||(41092105-41092163)
[»] chr2 (12 HSPs)
chr2 (434-568)||(4638168-4638302)
chr2 (473-568)||(31111466-31111561)
chr2 (432-568)||(13852307-13852453)
chr2 (430-519)||(27866622-27866710)
chr2 (430-520)||(36009179-36009269)
chr2 (430-551)||(37630343-37630461)
chr2 (433-568)||(38606980-38607114)
chr2 (473-566)||(29109202-29109295)
chr2 (474-557)||(3919904-3919987)
chr2 (459-510)||(10721926-10721977)
chr2 (429-478)||(12894051-12894100)
chr2 (473-557)||(5526270-5526353)
[»] scaffold0565 (1 HSPs)
scaffold0565 (437-566)||(1884-2013)
[»] scaffold0879 (1 HSPs)
scaffold0879 (473-568)||(618-713)
[»] chr3 (10 HSPs)
chr3 (481-568)||(46655576-46655663)
chr3 (433-566)||(44471020-44471163)
chr3 (475-557)||(30554588-30554670)
chr3 (473-519)||(46892657-46892703)
chr3 (475-566)||(779538-779629)
chr3 (430-477)||(26757593-26757640)
chr3 (473-557)||(11503375-11503459)
chr3 (475-566)||(44682037-44682129)
chr3 (429-495)||(22240516-22240582)
chr3 (475-551)||(44285615-44285691)
[»] scaffold0070 (2 HSPs)
scaffold0070 (430-556)||(13756-13882)
scaffold0070 (430-477)||(33729-33776)
[»] chr6 (2 HSPs)
chr6 (473-557)||(23301464-23301548)
chr6 (429-557)||(23585862-23585990)
[»] scaffold0002 (1 HSPs)
scaffold0002 (429-495)||(344452-344518)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 227 - 568
Target Start/End: Complemental strand, 7956717 - 7956378
Alignment:
Q  227 aataattgggtatattttcacatttaactactctaataattgggtatattttcatgtttaactactctaataatatatttaactacgtactccaaattga 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||    
T  7956717 aataattgggtatattttcacatttaactactctaataattgggtatattttcatgtttaactactctaataatat--ttaactacatactccaaattga 7956620  T
Q  327 aagttagtacgtacttagtacaaacatgaaagaaagttttataacttgaatgattaattttattcgtattattttgacacttttgatctacaacaagtac 426  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  || ||||||||||||||||||||||| ||||||||    
T  7956619 aagttagtacgtacttagtacaaacatgaaagaaagttttatcacttgaatgattaattttatgtgtcttattttgacacttttgatctacgacaagtac 7956520  T
Q  427 acgtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaac 526  Q
    |||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  7956519 acgtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatattcgaccttgctttgtttggtttgaaaccgattcgaac 7956420  T
Q  527 caatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  7956419 caatcgaaaccgatctagtttggtttggttcatggtttttca 7956378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 7956883 - 7956758
Alignment:
Q  65 taaggacattactgatgaataatatgtaattacctctaccaactttctttaaaccttaaaacctgtcatgaccttgatgaacttcatttaaattcaactc 164  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7956883 taagaacattactgatggataatatgtaattacctctaccaactttctttaaaccttaaaacctgtcatgaccttgatgaacttcatttaaattcaactc 7956784  T
Q  165 atctaaacttttcaccacaaagaaag 190  Q
    ||||||||||||||||||||||||||    
T  7956783 atctaaacttttcaccacaaagaaag 7956758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 430 - 568
Target Start/End: Complemental strand, 17722596 - 17722458
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 529  Q
    ||||||||||| ||||||| | ||||||||||||| ||||||||||||||| |||||||||| |||||| |||||||||||||||||| || ||||| ||    
T  17722596 taggggtgtaaatggttcggataaaaccaatgaaaccgaaagtccaaaccggaaaaatatccaaccttgtttggttcggtttgaaaccaatccgaactaa 17722497  T
Q  530 tcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  17722496 tcgaaaccgatctagtttggtttggttcatgatttttca 17722458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 430 - 568
Target Start/End: Complemental strand, 44223503 - 44223365
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 529  Q
    ||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||  || |||| ||||||| |||| ||||||||  |||||||    
T  44223503 taggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaaaaatatatgatcttgtttggttcagtttaaaaccgatctgaaccaa 44223404  T
Q  530 tcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    |||||||| ||||| |||||||||||||||| |||||||    
T  44223403 tcgaaaccaatctagtttggtttggttcatgatttttca 44223365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 430 - 566
Target Start/End: Complemental strand, 3767832 - 3767696
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 529  Q
    |||| |||||||||||||| |||||||| |||||| ||||| |||||||||||||| |||||||||||| || ||||||||  |||||||  ||||||||    
T  3767832 taggagtgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaaaagtatccgaccttgtttagttcggttcaaaaccgaaccgaaccaa 3767733  T
Q  530 tcgaaaccgatctattttggtttggttcatggttttt 566  Q
    || ||||||||||| |||||||||||||  |||||||    
T  3767732 tctaaaccgatctagtttggtttggttctcggttttt 3767696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 434 - 566
Target Start/End: Complemental strand, 34760979 - 34760846
Alignment:
Q  434 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaa-tatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcg 532  Q
    |||||||| |||||| |||||||| |||||| ||||| ||||||||||||||| |||| || |||| |||||||||||  ||| |||  |||||||| |     
T  34760979 ggtgtaagcggttcgaacaaaaccgatgaaaccgaaaatccaaaccgaaaaaagtatctgatcttgtttggttcggttcaaaatcgaaccgaaccaacct 34760880  T
Q  533 aaaccgatctattttggtttggttcatggttttt 566  Q
    ||||||||||| ||||||||||||| ||||||||    
T  34760879 aaaccgatctagtttggtttggttcttggttttt 34760846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 429 - 568
Target Start/End: Original strand, 35948826 - 35948975
Alignment:
Q  429 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccg 518  Q
    ||||||||||||||| |||| |||||||||| |||| ||||||||||||  |||          |||||||||||| ||| |||||||||||||||||||    
T  35948826 gtaggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccg 35948925  T
Q  519 attcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    || |||| || || ||| ||||||| ||||||||| ||||||||||||||    
T  35948926 atccgaatcattcaaaatcgatctagtttggtttgattcatggtttttca 35948975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 568
Target Start/End: Original strand, 9040426 - 9040560
Alignment:
Q  429 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 528  Q
    |||||||| |||| |||||| | |||||| ||||||||||||||||||||||||||  ||||||||||||| | | | ||||  ||||     |||||||    
T  9040426 gtaggggtataagcggttcggataaaaccgatgaaatcgaaagtccaaaccgaaaatgtatccgaccttgccttgataggttcaaaac-----cgaacca 9040520  T
Q  529 atcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    ||| ||||||||||  |||||||||||||  |||||||||    
T  9040521 atctaaaccgatcttgtttggtttggttctcggtttttca 9040560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 7956985 - 7956934
Alignment:
Q  19 agaccgtcaccaaaacttacagtgttaatgaaactgacccagttgataagga 70  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  7956985 agaccgtcaccaaaacttacagtgataacgaaactgacccagttgataagga 7956934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 434 - 507
Target Start/End: Complemental strand, 20860500 - 20860427
Alignment:
Q  434 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcg 507  Q
    ||||||||||||||| |||||||| |||||| ||||| | ||||| |||||| |||| ||||||| ||||||||    
T  20860500 ggtgtaagtggttcgaacaaaaccgatgaaaccgaaaattcaaactgaaaaattatctgaccttgtttggttcg 20860427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 556
Target Start/End: Complemental strand, 25456308 - 25456182
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 529  Q
    ||||||||||||  ||||| |||||| ||||||||   ||| ||||||||| |||  ||||||||||||  |||||| |||  |||||||  |||| |||    
T  25456308 taggggtgtaagaagttcggacaaaatcaatgaaactaaaattccaaaccggaaatgtatccgaccttgtctggttcagttcaaaaccgaaccgaatcaa 25456209  T
Q  530 tcgaaaccgatctattttggtttggtt 556  Q
    || ||||| ||||  ||||||||||||    
T  25456208 tctaaaccaatcttgtttggtttggtt 25456182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 7956684 - 7956644
Alignment:
Q  226 taataattgggtatattttcacatttaactactctaataat 266  Q
    |||||||||||||||||||||  ||||||||||||||||||    
T  7956684 taataattgggtatattttcatgtttaactactctaataat 7956644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 557
Target Start/End: Complemental strand, 16570987 - 16570911
Alignment:
Q  481 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttc 557  Q
    ||||||||||| |||||| |||||| ||||  |||||||  | |||||| | ||||||||||| ||||||| |||||    
T  16570987 aaaaaatatccaaccttgtttggtttggttcaaaaccgaaccaaaccaacctaaaccgatctaatttggttaggttc 16570911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 566
Target Start/End: Original strand, 32321853 - 32321945
Alignment:
Q  474 caaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggttttt 566  Q
    |||||||||||| ||| |||||||| |||||||||||| ||| | |  |||| |||   ||||||||||| ||||||| |||||  |||||||    
T  32321853 caaaccgaaaaagtattcgaccttgtttggttcggtttaaaaacaaaccgaatcaacataaaccgatctaatttggttcggttctcggttttt 32321945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 432 - 568
Target Start/End: Original strand, 25785763 - 25785899
Alignment:
Q  432 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatc 531  Q
    ||||||||||||||||| |||||||||| ||||  |||| | ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  25785763 ggggtgtaagtggttcggacaaaaccaacgaaactgaaatttcaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatccgaaccaatc 25785862  T
Q  532 gaaaccgatctattttggtttggttcatggtttttca 568  Q
    ||||||||| || ||||||||||||||||||||||||    
T  25785863 gaaaccgatatagtttggtttggttcatggtttttca 25785899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 429 - 566
Target Start/End: Complemental strand, 16585051 - 16584904
Alignment:
Q  429 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccg 518  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||||||||          ||||||||| |||||| |||||||||||||||||||    
T  16585051 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccg 16584952  T
Q  519 attcgaaccaatcgaaaccgatctattttggtttggttcatggttttt 566  Q
    || |||||||||||| ||||||||| ||||||||||||||||||||||    
T  16584951 atccgaaccaatcgataccgatctagtttggtttggttcatggttttt 16584904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 429 - 568
Target Start/End: Original strand, 11619933 - 11620066
Alignment:
Q  429 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 528  Q
    |||||||||||||||||||| |||||||||| |||| |||||      ||| ||||||||||||| |||| ||||||| ||||||||||||| | ||| |    
T  11619933 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaa------accaaaaaaatatccgatcttgtttggttcagtttgaaaccgatccaaacta 11620026  T
Q  529 atcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  11620027 atcgaaaccgatctagtttggtttggttcatggtttttca 11620066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 434 - 568
Target Start/End: Original strand, 8083990 - 8084135
Alignment:
Q  434 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaac----------cgaaaa-aatatccgaccttgcttggttcggtttgaaaccgattc 522  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||||          |||||| |||||||||||||| |||||| ||||||||||| || |    
T  8083990 ggtgtaagtggttcggacataaccaacgaaatcgaaagtccaaactaaatcaaaccgaaaaaaatatccgaccttgtttggtttggtttgaaaccaatcc 8084089  T
Q  523 gaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||    
T  8084090 gaaccaatcgaaaccgatctagtttggtttggttcatggtttttca 8084135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 473 - 568
Target Start/End: Complemental strand, 1161565 - 1161471
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    ||||||||||||| |||||||||||  |||||||||||||||||| || | | |||||||||||||||||| ||||||||||||||||||||||||    
T  1161565 ccaaaccgaaaaa-tatccgaccttatttggttcggtttgaaaccaatccaagccaatcgaaaccgatctagtttggtttggttcatggtttttca 1161471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 473 - 568
Target Start/End: Complemental strand, 42010102 - 42010007
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||| | ||||||| |||||||||||| ||| |||||  |||||||||||||    
T  42010102 ccaaaccgaaaaaatatccgacattgtttggttcggtttgaaaccgatccaaaccaattgaaaccgatctagtttagtttgactcatggtttttca 42010007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 432 - 566
Target Start/End: Original strand, 18461120 - 18461255
Alignment:
Q  432 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaa-aaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaat 530  Q
    ||||||||||||||||  |||||||||| |||| | |||||||||||| ||  ||||||||||||||| || ||||||||| ||| ||||  | ||||||    
T  18461120 ggggtgtaagtggttcaaacaaaaccaacgaaaccaaaagtccaaaccaaaccaaatatccgaccttgtttagttcggtttcaaatcgatctggaccaat 18461219  T
Q  531 cgaaaccgatctattttggtttggttcatggttttt 566  Q
    | |||||||| || |||||||||||||||| |||||    
T  18461220 caaaaccgatttagtttggtttggttcatgattttt 18461255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 566
Target Start/End: Original strand, 11911646 - 11911731
Alignment:
Q  481 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggttttt 566  Q
    ||||| |||||||||||| |||||||||||  |||||||  |||||||| | ||||||||||| |||| ||| |||| ||||||||    
T  11911646 aaaaagtatccgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaaccgatctagtttgatttagttcttggttttt 11911731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 34148541 - 34148499
Alignment:
Q  262 ataattgggtatattttcatgtttaactactctaataatatat 304  Q
    ||||||||||||||||||||||||||||||||| | |||||||    
T  34148541 ataattgggtatattttcatgtttaactactctgaaaatatat 34148499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 482
Target Start/End: Complemental strand, 32678602 - 32678554
Alignment:
Q  434 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa 482  Q
    ||||||||||||||| |||||||| |||||||||||| | |||||||||    
T  32678602 ggtgtaagtggttcgaacaaaaccgatgaaatcgaaaattcaaaccgaa 32678554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 505
Target Start/End: Original strand, 4919491 - 4919566
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggtt 505  Q
    ||||||||||||||||  | |||||||| | |||| ||||||| |||||||||||  |||| |||||||| |||||    
T  4919491 taggggtgtaagtggtagggacaaaaccgacgaaaccgaaagttcaaaccgaaaaggtatctgaccttgcctggtt 4919566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 463
Target Start/End: Original strand, 33857601 - 33857634
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaa 463  Q
    ||||||||||||||||||| ||||||||||||||    
T  33857601 taggggtgtaagtggttcggacaaaaccaatgaa 33857634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 463
Target Start/End: Complemental strand, 33923322 - 33923289
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaa 463  Q
    ||||||||||||||||||| ||||||||||||||    
T  33923322 taggggtgtaagtggttcggacaaaaccaatgaa 33923289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 429 - 568
Target Start/End: Complemental strand, 23108098 - 23107949
Alignment:
Q  429 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccg 518  Q
    |||||||||||||||||||| |||||||||| |||| |||||||||||||||||          |||||||||||||||| |||||| ||||||||||||    
T  23108098 gtaggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaacaggaaaaatatccgaccttgtttggtttggtttgaaaccg 23107999  T
Q  519 attcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    || |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  23107998 atccgaaccaatcgaaaccgatctagtttggtttgattcatggtttttca 23107949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 481 - 568
Target Start/End: Original strand, 4413515 - 4413602
Alignment:
Q  481 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    ||||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||||| |||| |||||||||||||||||||    
T  4413515 aaaaaatatccgatcttgtttggttcggtttaaaaccgatccgaaccaatcgaaaccgatctagtttgctttggttcatggtttttca 4413602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 473 - 568
Target Start/End: Complemental strand, 24466448 - 24466353
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    |||||| ||||||||||| || |||| ||||||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||||||||||||    
T  24466448 ccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttca 24466353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 473 - 568
Target Start/End: Complemental strand, 28319423 - 28319328
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||||| | |||||||||| ||| |||| || ||||||||||||||||||||||||    
T  28319423 ccaaaccgaaaaaatatctgacattgtttggttcggtttgaaaccgttccgaaccaatcaaaatcgatttaatttggtttggttcatggtttttca 28319328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 430 - 566
Target Start/End: Original strand, 42141257 - 42141394
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccg-aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 528  Q
    |||||| |||||||||| | |||||||| |||||| ||||| ||||||||| ||||||||| |||||||  |||||||||||  |||||||   |||| |    
T  42141257 taggggcgtaagtggttaggacaaaaccgatgaaaccgaaaatccaaaccgaaaaaaatattcgaccttctttggttcggttcaaaaccgaactgaacaa 42141356  T
Q  529 atcgaaaccgatctattttggtttggttcatggttttt 566  Q
    | | ||| ||||||| ||||||| ||||| ||||||||    
T  42141357 acctaaatcgatctactttggttcggttcttggttttt 42141394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 435 - 510
Target Start/End: Complemental strand, 13207547 - 13207472
Alignment:
Q  435 gtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtt 510  Q
    ||||||| |||||| |||||||| |||||||||||| |||||||||||||| |||| || |||| |||||||||||    
T  13207547 gtgtaagcggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaaaagtatctgatcttgtttggttcggtt 13207472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 434 - 557
Target Start/End: Complemental strand, 53393337 - 53393204
Alignment:
Q  434 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccgattcg 523  Q
    ||||||||||||||| |||||||| |||||| ||||| |||||||||||          ||| |||||||||||| |||||||||||| |||| ||  ||    
T  53393337 ggtgtaagtggttcggacaaaaccgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaactgaaccg 53393238  T
Q  524 aaccaatcgaaaccgatctattttggtttggttc 557  Q
    |||||| | ||||||||||| ||||||| |||||    
T  53393237 aaccaacctaaaccgatctagtttggttcggttc 53393204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 542
Target Start/End: Complemental strand, 8606265 - 8606196
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatct 542  Q
    ||||||||||||| ||||| || ||| |||| ||||||  ||||| | ||||||||||| ||||||||||    
T  8606265 ccaaaccgaaaaagtatccaactttgtttggctcggttcaaaaccaaatcgaaccaatctaaaccgatct 8606196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 479
Target Start/End: Complemental strand, 39839153 - 39839104
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaacc 479  Q
    ||||||||||||||||||| || ||||| |||||| ||||| ||||||||    
T  39839153 taggggtgtaagtggttcggacgaaaccgatgaaaccgaaaatccaaacc 39839104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 430 - 568
Target Start/End: Original strand, 39695087 - 39695230
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa-----accgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcga 524  Q
    |||||||||||||||||||  ||||||||| |||| |||||||||||     |||||| | ||||||||||||| |||||||||||||||||||||  ||    
T  39695087 taggggtgtaagtggttcgggcaaaaccaacgaaaccgaaagtccaacccaaaccgaagagatatccgaccttgtttggttcggtttgaaaccgatctga 39695186  T
Q  525 accaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    |||||||||||| ||| || ||||||||||||||||||||||||    
T  39695187 accaatcgaaactgatatagtttggtttggttcatggtttttca 39695230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 430 - 568
Target Start/End: Original strand, 46993258 - 46993396
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 529  Q
    |||||||| |||||||||| |||||| | ||||||| |||||| |||| | ||||||||| |||||||| |||| |||||||||||  ||| |||| |||    
T  46993258 taggggtggaagtggttcggacaaaatcgatgaaattgaaagttcaaatctaaaaaatattcgaccttgtttgggtcggtttgaaattgatccgaatcaa 46993357  T
Q  530 tcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  46993358 tcgaaactgatctagtttggtttggttcatggtttttca 46993396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 430 - 568
Target Start/End: Original strand, 7994955 - 7995093
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 529  Q
    |||||||||||  ||||||||  ||||||| ||||  || ||||||||| ||||||||||  ||||||| |||||||||||  ||| |||| ||||||||    
T  7994955 taggggtgtaaacggttcgtattaaaccaacgaaactgatagtccaaactgaaaaaatatttgaccttgtttggttcggttgaaaatcgatccgaaccaa 7995054  T
Q  530 tcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    | |||||||||||| ||||||||||||||||||||||||    
T  7995055 ttgaaaccgatctagtttggtttggttcatggtttttca 7995093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 430 - 568
Target Start/End: Complemental strand, 7352555 - 7352407
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa----------ccgaaaaaatatccgaccttgcttggttcggtttgaaaccga 519  Q
    ||||||||||| ||||||  |||||||||| |||| ||||||||||||          ||||||||||||||||| ||  |||||| |||||||||||||    
T  7352555 taggggtgtaattggttcagacaaaaccaacgaaaccgaaagtccaaatcaaaccgaaccgaaaaaatatccgactttatttggtttggtttgaaaccga 7352456  T
Q  520 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    | ||||||||||||||||| |||| ||||||||||||||||||||||||    
T  7352455 tccgaaccaatcgaaaccggtctagtttggtttggttcatggtttttca 7352407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 430 - 480
Target Start/End: Complemental strand, 3997128 - 3997078
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccg 480  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  3997128 taggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccg 3997078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 483
Target Start/End: Complemental strand, 27227089 - 27227036
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaa 483  Q
    ||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||    
T  27227089 taggggtgtaagttgttcggacaaaaccgatgaaatcaaaagtccaaaccgaaa 27227036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 568
Target Start/End: Complemental strand, 11727449 - 11727366
Alignment:
Q  475 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    |||||||||||||||  ||||||| ||||||||||||||||||          |||| ||||||||||| ||||||||||||| ||||||||||    
T  11727449 aaaccgaaaaaatatatgaccttgtttggttcggtttgaaacc----------aatcaaaaccgatctagtttggtttggttcgtggtttttca 11727366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 557
Target Start/End: Complemental strand, 25545332 - 25545256
Alignment:
Q  481 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttc 557  Q
    ||||| ||| |||||||| |||||||||||  |||||||    |||||| | ||||||||||| |||||||||||||    
T  25545332 aaaaagtattcgaccttgattggttcggttcaaaaccgaactaaaccaacctaaaccgatctagtttggtttggttc 25545256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 7e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 430 - 566
Target Start/End: Original strand, 31895896 - 31896042
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa----------accgaaaaaatatccgaccttgcttggttcggtttgaaaccga 519  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||          |||||||||||||||||||||| ||||||||||||||||||||    
T  31895896 taggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccga 31895995  T
Q  520 ttcgaaccaatcgaaaccgatctattttggtttggttcatggttttt 566  Q
    |  ||||||||| ||||||||||| |||||||||||||||| |||||    
T  31895996 tctgaaccaatccaaaccgatctagtttggtttggttcatgattttt 31896042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 430 - 568
Target Start/End: Complemental strand, 16746726 - 16746578
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccga 519  Q
    ||||| ||||||||||||| |||||||||| |||| |||||||| ||||||||          ||||||||| |||||| ||||||||||||||||||||    
T  16746726 tagggatgtaagtggttcggacaaaaccaacgaaaccgaaagtctaaaccgaaccaaatcgaaaaaatatccaaccttgtttggttcggtttgaaaccga 16746627  T
Q  520 ttcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    | | |||||||||||||||||||| ||||||||| ||||||||||||||    
T  16746626 tccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttca 16746578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 479 - 568
Target Start/End: Complemental strand, 16746548 - 16746459
Alignment:
Q  479 cgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    ||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||||    
T  16746548 cgaaaaaatatccaaccttgtttggttcggtttgaaaccgatccaaaccaatcgaaaccgatctagtttggtttgattcatggtttttca 16746459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 473 - 568
Target Start/End: Original strand, 19947761 - 19947856
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||||| | ||||||||||| | |||||| |||| |||||||||||||||||||    
T  19947761 ccaaaccgaaaaaatatccgacattgtttggttcagtttgaaaccgatccaaaccaatcgaatctgatctactttgatttggttcatggtttttca 19947856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 440 - 498
Target Start/End: Complemental strand, 41092163 - 41092105
Alignment:
Q  440 agtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttg 498  Q
    ||||||||| ||||||||||||||| |||||||| |||| |||||  |||| |||||||    
T  41092163 agtggttcgaacaaaaccaatgaaaccgaaagtcaaaactgaaaaggtatctgaccttg 41092105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 434 - 568
Target Start/End: Original strand, 4638168 - 4638302
Alignment:
Q  434 ggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcga 533  Q
    |||||||| |||||  || ||||||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||| |    
T  4638168 ggtgtaagcggttcagactaaaccaacgaaaccgaaagtccaaaccgaaaaaatatccgaccttgttcggttcggtttgaaatcgatccgaaccaatcaa 4638267  T
Q  534 aaccgatctattttggtttggttcatggtttttca 568  Q
     || ||| || ||||||||||||||||||||||||    
T  4638268 tactgatttagtttggtttggttcatggtttttca 4638302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 473 - 568
Target Start/End: Original strand, 31111466 - 31111561
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| |||||||||||| ||||||||||||||||||||||||    
T  31111466 ccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaactgatctgaaccaattgaaaccgatctagtttggtttggttcatggtttttca 31111561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 432 - 568
Target Start/End: Complemental strand, 13852453 - 13852307
Alignment:
Q  432 ggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaa----------aaaatatccgaccttgcttggttcggtttgaaaccgatt 521  Q
    ||||||||||| ||||| |||||||||| |||||||||||||||||  |||          |||||||| ||| ||| ||| |||||||||||||||||     
T  13852453 ggggtgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaattgaatcaaatcaaaaaaatatctgactttgtttgattcggtttgaaaccgatc 13852354  T
Q  522 cgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    | |||||||| ||||||||||| ||||||||||||||| ||||||||    
T  13852353 caaaccaatcaaaaccgatctagtttggtttggttcatagtttttca 13852307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 430 - 519
Target Start/End: Original strand, 27866622 - 27866710
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccga 519  Q
    ||||||||||||||||||| |||||| | || ||| ||||| ||||||||| |||| ||||||||||||||||||||||||  |||||||    
T  27866622 taggggtgtaagtggttcggacaaaatcgataaaaccgaaaatccaaaccg-aaaagtatccgaccttgcttggttcggttcaaaaccga 27866710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 430 - 520
Target Start/End: Original strand, 36009179 - 36009269
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgat 520  Q
    |||||||  |||| ||||| ||||||| || |||||| ||||||||||  |||||||||||||| |||| || ||||||||||||||||||    
T  36009179 taggggttcaagtagttcggacaaaactaacgaaatcaaaagtccaaattgaaaaaatatccgatcttgtttagttcggtttgaaaccgat 36009269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 551
Target Start/End: Original strand, 37630343 - 37630461
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 529  Q
    |||||||||||||| |||| |||||||| |||||| ||||   ||||||||||||| ||||  ||||||||||||| ||||  ||| |||| | ||||||    
T  37630343 taggggtgtaagtgattcggacaaaaccgatgaaaccgaa---ccaaaccgaaaaagtatcgaaccttgcttggtttggttcaaaatcgatccaaaccaa 37630439  T
Q  530 tcgaaaccgatctattttggtt 551  Q
     | |||| |||||| |||||||    
T  37630440 cctaaactgatctagtttggtt 37630461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 433 - 568
Target Start/End: Original strand, 38606980 - 38607114
Alignment:
Q  433 gggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcg 532  Q
    ||||||||| |||||  |||||| ||| ||||  | |||||||||||||||| ||||||||||||| || ||||| ||  |||||||  ||||||||||     
T  38606980 gggtgtaagcggttcagacaaaatcaacgaaactgtaagtccaaaccgaaaatatatccgaccttg-tttgttcgattcaaaaccgaaccgaaccaatct 38607078  T
Q  533 aaaccgatctattttggtttggttcatggtttttca 568  Q
    |||| || ||  ||||||| ||||| ||||||||||    
T  38607079 aaactgaccttgtttggttcggttcttggtttttca 38607114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 566
Target Start/End: Complemental strand, 29109295 - 29109202
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggttttt 566  Q
    |||||| |||||| |||||||||||| ||||||| |||  |||||||  |||| ||| | ||||| ||||| |||||||||||||  |||||||    
T  29109295 ccaaactgaaaaattatccgaccttgtttggttcagttcaaaaccgaaccgaagcaacctaaaccaatctagtttggtttggttctcggttttt 29109202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 557
Target Start/End: Complemental strand, 3919987 - 3919904
Alignment:
Q  474 caaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttc 557  Q
    ||||||||||||  || |||| ||| |||||| ||||  |||||||  |||||||| | ||||||||||| |||||||||||||    
T  3919987 caaaccgaaaaagcattcgactttgtttggtttggttcaaaaccgaaccgaaccaaactaaaccgatctagtttggtttggttc 3919904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 510
Target Start/End: Original strand, 10721926 - 10721977
Alignment:
Q  459 atgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtt 510  Q
    |||||| ||||| |||||||||||||| |||| ||||||| |||||||||||    
T  10721926 atgaaaccgaaaatccaaaccgaaaaagtatctgaccttgtttggttcggtt 10721977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 478
Target Start/End: Complemental strand, 12894100 - 12894051
Alignment:
Q  429 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaac 478  Q
    |||||||||| ||||||||  |||||||||| |||||| |||||||||||    
T  12894100 gtaggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaac 12894051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 473 - 557
Target Start/End: Original strand, 5526270 - 5526353
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttc 557  Q
    ||||||||||||  |||||||||||| || ||||||||  |||| ||  |||||||| | ||||||||||| ||||||| |||||    
T  5526270 ccaaaccgaaaacgtatccgaccttgttttgttcggttcaaaactga-acgaaccaacctaaaccgatctagtttggttcggttc 5526353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 437 - 566
Target Start/End: Complemental strand, 2013 - 1884
Alignment:
Q  437 gtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaac 536  Q
    |||||||||||| |||||| ||| |||| | ||||| ||||  ||||||||||||||||||| |||||||||||||||| ||||  ||||||||| ||||    
T  2013 gtaagtggttcggacaaaatcaacgaaaccaaaagttcaaattgaaaaaatatccgaccttgtttggttcggtttgaaatcgatcggaaccaatcaaaac 1914  T
Q  537 cgatctattttggtttggttcatggttttt 566  Q
     |||||| ||||||||||||||||||||||    
T  1913 tgatctactttggtttggttcatggttttt 1884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 473 - 568
Target Start/End: Complemental strand, 713 - 618
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    |||||| ||||||||||| || |||| ||||||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||||||||||||    
T  713 ccaaactgaaaaaatatctgatcttgtttggttcggtttgaaaccgatccgaaccaattgaaaccgatctagtttgatttggttcatggtttttca 618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 481 - 568
Target Start/End: Original strand, 46655576 - 46655663
Alignment:
Q  481 aaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggtttttca 568  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||||| |||||||    
T  46655576 aaaaaatatccgaccttacttggttcggtttgaaaccgatccgaaccaatcaaaaccaatctagtttggtttggttcatgctttttca 46655663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 433 - 566
Target Start/End: Original strand, 44471020 - 44471163
Alignment:
Q  433 gggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaa----------accgaaaaaatatccgaccttgcttggttcggtttgaaaccgattc 522  Q
    |||||||||||||||| |||||||| |||||||||||| |||||          ||||||||  |||||||||||| || ||||||||  |||||||  |    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccgaacc 44471119  T
Q  523 gaaccaatcgaaaccgatctattttggtttggttcatggttttt 566  Q
     |||||||| ||||||||||| ||||||| ||||| ||||||||    
T  44471120 aaaccaatctaaaccgatctagtttggttcggttcttggttttt 44471163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 475 - 557
Target Start/End: Complemental strand, 30554670 - 30554588
Alignment:
Q  475 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttc 557  Q
    ||||||||||| |||||||||||| || ||||||||  ||| |||  |||||||||| ||||||||||| ||||||| |||||    
T  30554670 aaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcgaaccgaaccaatctaaaccgatctagtttggttcggttc 30554588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 473 - 519
Target Start/End: Original strand, 46892657 - 46892703
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccga 519  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||    
T  46892657 ccaaaccgaaaaaatatccgaccttgtttggttcggtttaaaaccga 46892703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 566
Target Start/End: Complemental strand, 779629 - 779538
Alignment:
Q  475 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttcatggttttt 566  Q
    ||||||||||| ||||| |||||| || ||||||||  |||| || ||||||||| | ||||| ||||| ||||||| ||||| ||||||||    
T  779629 aaaccgaaaaagtatccaaccttgtttagttcggttcaaaacagaatcgaaccaacctaaaccaatctagtttggttcggttcttggttttt 779538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 477
Target Start/End: Original strand, 26757593 - 26757640
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa 477  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||    
T  26757593 taggggtgtaagtggtttggacaaaaccaatgaaatcgaaaatccaaa 26757640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 557
Target Start/End: Complemental strand, 11503459 - 11503375
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttc 557  Q
    ||||||| ||||  ||||||||||||  ||||  ||||  |||||||  |||||||||||||||||||||  |||||||||||||    
T  11503459 ccaaaccaaaaatgtatccgaccttgtctggtaaggttcaaaaccgaaccgaaccaatcgaaaccgatcttatttggtttggttc 11503375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 566
Target Start/End: Complemental strand, 44682129 - 44682037
Alignment:
Q  475 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcg-aaaccgatctattttggtttggttcatggttttt 566  Q
    ||||||||||| ||| |||||||| ||||||||| |  |||||||   ||||||| |  ||||||||||| ||||||||||||| ||||||||    
T  44682129 aaaccgaaaaagtatacgaccttgtttggttcggatcaaaaccgaactgaaccaaacctaaaccgatctagtttggtttggttcttggttttt 44682037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 495
Target Start/End: Original strand, 22240516 - 22240582
Alignment:
Q  429 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgacc 495  Q
    |||| |||||||| | ||||  ||||||| |||||||||||||  |||||||||||| |||||||||    
T  22240516 gtagtggtgtaagcgattcggtcaaaaccgatgaaatcgaaaggtcaaaccgaaaaagtatccgacc 22240582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 551
Target Start/End: Original strand, 44285615 - 44285691
Alignment:
Q  475 aaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtt 551  Q
    |||||||||||||||  ||||||| |||||||||||  |||||||  |||||||| | ||| |||| || |||||||    
T  44285615 aaaccgaaaaaatatatgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaatcgatttagtttggtt 44285691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 430 - 556
Target Start/End: Original strand, 13756 - 13882
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaa 529  Q
    |||||||||||| |||||| |||||| ||||||||   ||||||||||||| |||  ||| ||||||||  |||||| |||  ||| |||  ||||||||    
T  13756 taggggtgtaagcggttcggacaaaatcaatgaaactaaaagtccaaaccggaaatgtattcgaccttgtctggttcagttcaaaatcgaaccgaaccaa 13855  T
Q  530 tcgaaaccgatctattttggtttggtt 556  Q
    || |||| |||||  ||||||||||||    
T  13856 tctaaactgatcttatttggtttggtt 13882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 477
Target Start/End: Original strand, 33729 - 33776
Alignment:
Q  430 taggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaa 477  Q
    ||||||||||||||||||| | |||||||||||||  |||||||||||    
T  33729 taggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaa 33776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 557
Target Start/End: Original strand, 23301464 - 23301548
Alignment:
Q  473 ccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaaccaatcgaaaccgatctattttggtttggttc 557  Q
    |||||||||||||  || |||||||| |||||||||||  |||||||  |||||||| | |||| |||||| ||||||| |||||    
T  23301464 ccaaaccgaaaaataattcgaccttgtttggttcggttcaaaaccgaaccgaaccaacctaaactgatctagtttggttcggttc 23301548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 429 - 557
Target Start/End: Original strand, 23585862 - 23585990
Alignment:
Q  429 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgaccttgcttggttcggtttgaaaccgattcgaacca 528  Q
    |||||||||||||| ||| | |||||||| ||||||  |||| || |||  |||||| |||||||||||| || ||||||||  |||||||  | ||| |    
T  23585862 gtaggggtgtaagtagtttggacaaaaccgatgaaactgaaaatctaaatagaaaaagtatccgaccttgttttgttcggttcaaaaccgaaccaaacta 23585961  T
Q  529 atcgaaaccgatctattttggtttggttc 557  Q
    |   |||||||| || |||||||||||||    
T  23585962 acgtaaaccgatatagtttggtttggttc 23585990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 495
Target Start/End: Complemental strand, 344518 - 344452
Alignment:
Q  429 gtaggggtgtaagtggttcgtacaaaaccaatgaaatcgaaagtccaaaccgaaaaaatatccgacc 495  Q
    |||||||||||||||||||| ||||||   |||||| ||||| |||||||| ||||| ||| |||||    
T  344518 gtaggggtgtaagtggttcggacaaaagtgatgaaaccgaaaatccaaaccaaaaaagtattcgacc 344452  T

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