View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15410_low_4 (Length: 554)
Name: NF15410_low_4
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15410_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 9 - 536
Target Start/End: Complemental strand, 51874790 - 51874263
Alignment:
| Q |
9 |
gaagaatattcaaaggaacatgaagagtaacagatatggcggaacaatacgttaatggcaatgttatattttgtgttcttaggtaaatacgaagaggatg |
108 |
Q |
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| T |
51874790 |
gaagaaaattcaaaggaacatgaagagtaacagatatggctgaacaatacgttaatggcaatgttatattttgtgttcttaggtaaatacgaagaggatg |
51874691 |
T |
|
| Q |
109 |
aagaaacgagagaaagaaaagatctggtagtgaaaagagaatgaaagtttgtgctgttgatgaaatttcttcatcttgaccacaagacatgagaatcttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51874690 |
aagaaacgagagaaagaaaagatctggtagtgaaaagagaatgaaagtttgtgctgttgatgaaatttcttcatcttgaccacaagacatgagaatcttt |
51874591 |
T |
|
| Q |
209 |
ttcatgttaagccataaatatgcaatgggaatggaagtggaaagaagtaaaagaacggctctttgaagagttaagccaagtatcttccattgtttagctc |
308 |
Q |
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| T |
51874590 |
ttcatgttaagccataaatatgcaatgggaatggaagtggaaagaagtaaaagaacggttctttgaagagttaagccaagtatcttccattgtttagctc |
51874491 |
T |
|
| Q |
309 |
cataagcttgtccacaaatgggttccattcccatggctaaaccagataggacagaataaccagttatgtttgcaaaacctatggagagagaacctcctgc |
408 |
Q |
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| T |
51874490 |
cataagcttgtccacaaatgggttccattcccatggctaaaccagataggacagaataaccagttatgtttgcaaaacctatggagagagaacctcctgc |
51874391 |
T |
|
| Q |
409 |
tagttctgtctcgccgagatagccaaggaaaagcatagagatcatagctcttgaatataagagtaaaccagttatagctgttggacctgatattttacct |
508 |
Q |
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| T |
51874390 |
tagttctgtctcgccgagatagccaaggaaaagcatagagatcatagctcttgaatataagagtaaaccagttatagctgttggacctgatattttacct |
51874291 |
T |
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| Q |
509 |
atggccttcaattcttctatcacctgaa |
536 |
Q |
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| T |
51874290 |
atggccttcaattcttctatcacctgaa |
51874263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 141; Significance: 1e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 242 - 510
Target Start/End: Original strand, 28506275 - 28506543
Alignment:
| Q |
242 |
gaagtggaaagaagtaaaagaacggctctttgaagagttaagccaagtatcttccattgtttagctccataagcttgtccacaaatgggttccattccca |
341 |
Q |
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| T |
28506275 |
gaagttgaaagaagaagaagaactgttctttgaagtgttaagccaagtatcttccattgttttgctccataagcttgtccacaaattggttccattccca |
28506374 |
T |
|
| Q |
342 |
tggctaaaccagataggacagaataaccagttatgtttgcaaaacctatggagagagaacctcctgctagttctgtctcgccgagatagccaaggaaaag |
441 |
Q |
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| T |
28506375 |
tggctaaacctgatatcactgagtaaccagtgatatttgcaaagcctattgaaagtgaacctcctgctagttccatctctccaagatatccaaggaaaat |
28506474 |
T |
|
| Q |
442 |
catagagatcatagctcttgaatataagagtaaaccagttatagctgttggacctgatattttacctat |
510 |
Q |
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| T |
28506475 |
cattgatatcatagctcttgaatataacaataaaccagttattgttgttggacctgatatttttcctat |
28506543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 384
Target Start/End: Complemental strand, 2989905 - 2989822
Alignment:
| Q |
301 |
tttagctccataagcttgtccacaaatgggttccattcccatggctaaaccagataggacagaataaccagttatgtttgcaaa |
384 |
Q |
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| T |
2989905 |
tttagcaccaaaagcttgaccacaaataggttccattcccatggcaagaccagagagaatggagtaacctgtgatgtttgcaaa |
2989822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 342
Target Start/End: Complemental strand, 10676415 - 10676353
Alignment:
| Q |
280 |
taagccaagtatcttccattgtttagctccataagcttgtccacaaatgggttccattcccat |
342 |
Q |
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| T |
10676415 |
taagcaaagcatcttccattgctttgctccattagcttctccacaaataagttccattcccat |
10676353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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