View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15410_low_7 (Length: 405)

Name: NF15410_low_7
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15410_low_7
NF15410_low_7
[»] chr3 (3 HSPs)
chr3 (18-109)||(24202347-24202438)
chr3 (115-159)||(24202271-24202316)
chr3 (221-257)||(2081004-2081040)
[»] chr5 (3 HSPs)
chr5 (171-274)||(27565079-27565182)
chr5 (212-257)||(33961796-33961841)
chr5 (184-284)||(36680001-36680101)
[»] chr1 (4 HSPs)
chr1 (164-280)||(29415456-29415574)
chr1 (218-264)||(5157178-5157224)
chr1 (68-106)||(29413645-29413683)
chr1 (210-246)||(44120299-44120335)
[»] chr7 (2 HSPs)
chr7 (213-249)||(44995073-44995109)
chr7 (216-248)||(35267471-35267503)
[»] chr6 (1 HSPs)
chr6 (221-264)||(13908346-13908389)
[»] chr4 (2 HSPs)
chr4 (216-249)||(23990594-23990627)
chr4 (216-248)||(23983899-23983931)
[»] chr2 (2 HSPs)
chr2 (221-258)||(18525162-18525199)
chr2 (221-249)||(17976289-17976317)
[»] chr8 (1 HSPs)
chr8 (226-258)||(10559981-10560013)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 24202438 - 24202347
Alignment:
Q  18 agatctaaacatactcactgcaaatctaaatagagaaatgtgatactcactgaaatataaggaaatatggaaatcaatcctcatagatctcc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24202438 agatctaaacatactcactgcaaatctaaatagagaaatgtgatactcactgaaatataaggaaatatggaaatcaatcctcatagatctcc 24202347  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 24202316 - 24202271
Alignment:
Q  115 atgagatatttccatattattctaaaacc-aaccattcatgaaaat 159  Q
    |||||||||||||||| |||||||| ||| ||||||||||||||||    
T  24202316 atgagatatttccataatattctaacaccaaaccattcatgaaaat 24202271  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 2081004 - 2081040
Alignment:
Q  221 tttgaattgacttatttgaacttatctatagacataa 257  Q
    |||| |||||||||||||||||||||||| |||||||    
T  2081004 tttggattgacttatttgaacttatctattgacataa 2081040  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 171 - 274
Target Start/End: Original strand, 27565079 - 27565182
Alignment:
Q  171 tcacatgatattaaatgcatcatttctactcttcacaaccctagagcctatttgaattgacttatttgaacttatcta-tagacataaatacttgcaaaa 269  Q
    |||||||| |||||||||||| ||||||||||||||||||| || | | ||||| |||||||||||||||||||| || |||| ||||| ||||||||||    
T  27565079 tcacatgacattaaatgcatcctttctactcttcacaaccccagggtccatttggattgacttatttgaacttatgtactaga-ataaacacttgcaaaa 27565177  T
Q  270 accat 274  Q
    |||||    
T  27565178 accat 27565182  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 33961841 - 33961796
Alignment:
Q  212 tagagcctatttgaattgacttatttgaacttatctatagacataa 257  Q
    ||||||||||||||||||| |||||||| ||||||||  |||||||    
T  33961841 tagagcctatttgaattgaattatttgagcttatctacggacataa 33961796  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 284
Target Start/End: Original strand, 36680001 - 36680101
Alignment:
Q  184 aatgcatcatttctactcttcacaaccctagagcctatttgaattgacttatttgaacttatc-tatagacataaatacttgcaaaaaccatatgagaga 282  Q
    |||| ||| ||||||||||||||| ||||| || || |||| || ||||||||| |||||||| | ||| |||||| |||| |||||||||| ||| |||    
T  36680001 aatgtatcctttctactcttcacatccctaaagtctgtttggatcgacttatttaaacttatcttctag-cataaacacttacaaaaaccatttgaaaga 36680099  T
Q  283 ac 284  Q
    ||    
T  36680100 ac 36680101  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 29415456 - 29415574
Alignment:
Q  164 tatagaatcacatgatattaaatgcatcattt--ctactcttcacaaccctagagcctatttgaattgacttatttgaacttatctatagacataaatac 261  Q
    |||||||||| |||| | |||||||||| |||  ||||||||| || |||||||| || |||  || |||||||||||||||||||||   || |||  |    
T  29415456 tatagaatcagatgacactaaatgcatcctttttctactcttcgcagccctagagtctgtttagatcgacttatttgaacttatctattagcacaaactc 29415555  T
Q  262 ttgcaaaaaccatatgaga 280  Q
    ||||||||||||| |||||    
T  29415556 ttgcaaaaaccatttgaga 29415574  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 5157224 - 5157178
Alignment:
Q  218 ctatttgaattgacttatttgaacttatctatagacataaatacttg 264  Q
    ||||||| |||||||||||||||||||||||  |||||||| |||||    
T  5157224 ctatttggattgacttatttgaacttatctacggacataaacacttg 5157178  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 29413645 - 29413683
Alignment:
Q  68 tgaaatataaggaaatatggaaatcaatcctcatagatc 106  Q
    |||||||||||||| |||||||||||||||||| |||||    
T  29413645 tgaaatataaggaattatggaaatcaatcctcagagatc 29413683  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 44120299 - 44120335
Alignment:
Q  210 cctagagcctatttgaattgacttatttgaacttatc 246  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  44120299 cctagtgcctatttgaatcgacttatttgaacttatc 44120335  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 44995073 - 44995109
Alignment:
Q  213 agagcctatttgaattgacttatttgaacttatctat 249  Q
    ||||| |||||||||||||||||||||||||||||||    
T  44995073 agagcgtatttgaattgacttatttgaacttatctat 44995109  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 35267503 - 35267471
Alignment:
Q  216 gcctatttgaattgacttatttgaacttatcta 248  Q
    |||||||||||||||||||||||| ||||||||    
T  35267503 gcctatttgaattgacttatttgagcttatcta 35267471  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 13908389 - 13908346
Alignment:
Q  221 tttgaattgacttatttgaacttatctatagacataaatacttg 264  Q
    ||||||||||||||||||||||||||||  |||||||| |||||    
T  13908389 tttgaattgacttatttgaacttatctactgacataaacacttg 13908346  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 249
Target Start/End: Original strand, 23990594 - 23990627
Alignment:
Q  216 gcctatttgaattgacttatttgaacttatctat 249  Q
    |||||||||||||||||||||||| |||||||||    
T  23990594 gcctatttgaattgacttatttgagcttatctat 23990627  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 23983899 - 23983931
Alignment:
Q  216 gcctatttgaattgacttatttgaacttatcta 248  Q
    |||||||||||||||||||||||| ||||||||    
T  23983899 gcctatttgaattgacttatttgagcttatcta 23983931  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 18525162 - 18525199
Alignment:
Q  221 tttgaattgacttatttgaacttatctatagacataaa 258  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  18525162 tttgaattgacttatttgagcttatctacagacataaa 18525199  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 249
Target Start/End: Original strand, 17976289 - 17976317
Alignment:
Q  221 tttgaattgacttatttgaacttatctat 249  Q
    |||||||||||||||||||||||||||||    
T  17976289 tttgaattgacttatttgaacttatctat 17976317  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 10559981 - 10560013
Alignment:
Q  226 attgacttatttgaacttatctatagacataaa 258  Q
    |||||||||||||||||||||||| ||||||||    
T  10559981 attgacttatttgaacttatctattgacataaa 10560013  T

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