View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15410_low_8 (Length: 388)

Name: NF15410_low_8
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15410_low_8
NF15410_low_8
[»] chr4 (14 HSPs)
chr4 (35-378)||(28690067-28690409)
chr4 (35-163)||(10441143-10441272)
chr4 (50-163)||(40071636-40071749)
chr4 (50-163)||(51744671-51744784)
chr4 (50-160)||(37064940-37065050)
chr4 (50-163)||(54438344-54438457)
chr4 (56-166)||(17493750-17493860)
chr4 (50-163)||(34408844-34408957)
chr4 (50-119)||(46870651-46870720)
chr4 (50-164)||(925323-925437)
chr4 (50-119)||(20789717-20789786)
chr4 (50-119)||(41555506-41555575)
chr4 (50-163)||(39787992-39788106)
chr4 (66-119)||(3172222-3172275)
[»] chr2 (10 HSPs)
chr2 (35-164)||(31922011-31922140)
chr2 (35-165)||(25898461-25898591)
chr2 (50-163)||(4828276-4828389)
chr2 (50-163)||(45080605-45080718)
chr2 (50-164)||(2110219-2110333)
chr2 (50-117)||(16964862-16964929)
chr2 (50-164)||(43370673-43370787)
chr2 (50-163)||(29193988-29194101)
chr2 (50-119)||(42847094-42847163)
chr2 (50-119)||(8381503-8381572)
[»] chr3 (11 HSPs)
chr3 (35-163)||(30459806-30459934)
chr3 (50-163)||(48169724-48169837)
chr3 (50-163)||(50676475-50676588)
chr3 (50-164)||(12568195-12568309)
chr3 (50-164)||(13544659-13544773)
chr3 (50-164)||(54014236-54014350)
chr3 (50-163)||(41346047-41346160)
chr3 (50-164)||(51545661-51545775)
chr3 (50-163)||(40496773-40496886)
chr3 (50-119)||(24709054-24709123)
chr3 (130-163)||(41346314-41346347)
[»] chr5 (7 HSPs)
chr5 (35-164)||(33403193-33403322)
chr5 (35-163)||(36768761-36768889)
chr5 (35-119)||(5712270-5712354)
chr5 (50-164)||(36982185-36982299)
chr5 (50-164)||(14044055-14044169)
chr5 (50-119)||(42897561-42897630)
chr5 (50-119)||(2970851-2970920)
[»] chr7 (14 HSPs)
chr7 (35-163)||(22337710-22337839)
chr7 (35-163)||(22619524-22619652)
chr7 (48-164)||(4040946-4041062)
chr7 (50-164)||(24300331-24300445)
chr7 (35-161)||(25943818-25943943)
chr7 (50-163)||(40232302-40232415)
chr7 (50-163)||(29737405-29737518)
chr7 (50-119)||(21442985-21443054)
chr7 (50-163)||(27596272-27596385)
chr7 (57-163)||(31689547-31689653)
chr7 (50-119)||(6392315-6392384)
chr7 (76-118)||(8577715-8577757)
chr7 (50-163)||(41427835-41427948)
chr7 (50-119)||(38276732-38276801)
[»] chr1 (11 HSPs)
chr1 (50-164)||(46370926-46371040)
chr1 (50-164)||(46862555-46862669)
chr1 (50-163)||(28036888-28037001)
chr1 (56-163)||(1929409-1929516)
chr1 (50-163)||(39151084-39151197)
chr1 (50-163)||(50776997-50777110)
chr1 (50-163)||(8229063-8229176)
chr1 (50-163)||(32045833-32045946)
chr1 (50-163)||(38321645-38321758)
chr1 (50-119)||(38817818-38817887)
chr1 (130-164)||(1929216-1929250)
[»] scaffold0047 (1 HSPs)
scaffold0047 (50-163)||(69753-69866)
[»] chr8 (11 HSPs)
chr8 (35-113)||(11146820-11146897)
chr8 (50-164)||(18575027-18575141)
chr8 (50-163)||(27820773-27820886)
chr8 (50-163)||(11254500-11254613)
chr8 (50-119)||(39906954-39907023)
chr8 (56-119)||(9753814-9753877)
chr8 (50-164)||(38070082-38070196)
chr8 (50-163)||(17493526-17493639)
chr8 (56-119)||(12738559-12738622)
chr8 (50-119)||(17336157-17336226)
chr8 (50-110)||(13243733-13243793)
[»] scaffold0318 (1 HSPs)
scaffold0318 (50-163)||(16357-16470)
[»] chr6 (10 HSPs)
chr6 (50-163)||(13041972-13042085)
chr6 (57-164)||(12350271-12350378)
chr6 (50-163)||(28541774-28541887)
chr6 (50-119)||(31833752-31833821)
chr6 (50-110)||(1870587-1870647)
chr6 (50-163)||(1241109-1241222)
chr6 (56-110)||(13210397-13210451)
chr6 (50-119)||(16435823-16435892)
chr6 (50-119)||(7271265-7271334)
chr6 (50-119)||(30736463-30736532)
[»] scaffold0061 (1 HSPs)
scaffold0061 (50-163)||(10204-10317)
[»] scaffold0519 (1 HSPs)
scaffold0519 (50-163)||(10780-10893)
[»] scaffold0532 (1 HSPs)
scaffold0532 (50-119)||(3858-3927)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 35 - 378
Target Start/End: Original strand, 28690067 - 28690409
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 134  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||         ||||||    
T  28690067 acatggagatcatacaagcaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaaatattttgcgacaatttttttt-acaaat 28690165  T
Q  135 atgtcacttattcagagacggagggagtaagtgattaatagtttgatcgtaactcttatgtatagagaattctctcaggtcgaaacttggtacaaataat 234  Q
    |||||| |||||||| |||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28690166 atgtcagttattcagggacggaggaaataagtgattaatagtttgatcctaactcttgtgtatagagaattctctcaggtcgaaacttggtacaaataat 28690265  T
Q  235 atggtaaatatttgtgtctttattgacgctaacatgtgtatatatatacaactaattaacgttattgttgtagtttgtctgtgaggatattctatgtaga 334  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28690266 atggtaaatatttgcgtctttattgacgctaacatgtgtatatatatacaactaattaacgttattgttgtagtttgtctgtaaggatattctatgtaga 28690365  T
Q  335 attcttggtttgaatccggtcaccacatttcctgttcgtctgtg 378  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||    
T  28690366 atttttggtttgaatccggtcaccacatttcctgttcgtgtgtg 28690409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 10441272 - 10441143
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggac-aannnnnnnnnacaaa 133  Q
    |||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||         |||||    
T  10441272 acatggagaccatacaagcaattataagaggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaaatttttttttacaaa 10441173  T
Q  134 tatgtcacttattcagagacggagggagta 163  Q
    || ||||||||||||| |||||||||||||    
T  10441172 taggtcacttattcagggacggagggagta 10441143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 40071636 - 40071749
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  40071636 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 40071735  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  40071736 ggacggagggagta 40071749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 51744671 - 51744784
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||||||||||||||||||||| ||||||||         ||||||| |||||||||| ||    
T  51744671 aagtatttataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttatttag 51744770  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  51744771 ggacggagggagta 51744784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 37064940 - 37065050
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  37064940 aagtatttataaggggtaaatatgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataagtcacttattcag 37065039  T
Q  150 agacggaggga 160  Q
     ||||||||||    
T  37065040 ggacggaggga 37065050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 54438344 - 54438457
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||| ||||||||| ||||||||         ||||||| |||||||||||||    
T  54438344 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtattgtgggacaaatattttttacaaataggtcacttattcag 54438443  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  54438444 ggacggagggagta 54438457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 17493860 - 17493750
Alignment:
Q  56 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacgg 155  Q
    ||||||||| ||||  |||||||||||||||  |||| ||||||| ||||||||| || |||||         ||||||| ||||||||||||| |||||    
T  17493860 ttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaagtattgtgagacaaatattttttacaaataggtcacttattcagggacgg 17493761  T
Q  156 agggagtaagt 166  Q
    |||||||||||    
T  17493760 agggagtaagt 17493750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 34408844 - 34408957
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  ||||||||||| | |  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  34408844 aagtatttataaggggtaaatctgtcaaattttacctagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcag 34408943  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  34408944 ggacggagggagta 34408957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 46870720 - 46870651
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| |||||||||||||| |||||||||| | ||| ||||| |||| |||||||||||| ||||||||    
T  46870720 aagtatttataagggataaatttgtcaaattgtacttaaaaatctgagcaggtcaagtattgtgggacaa 46870651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 925323 - 925437
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| | ||| ||         ||||||| |||||||||||||    
T  925323 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtaggataaatattttttacaaataggtcacttattcag 925422  T
Q  150 agacggagggagtaa 164  Q
     ||||| ||||||||    
T  925423 ggacggtgggagtaa 925437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 20789786 - 20789717
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||||||||  ||||||||||| |||  |||| ||||||| ||||||||| ||||||||    
T  20789786 aagtatttataagggataaatctgtcaaattttacttagaaatctgagaagatcaagtattatgggacaa 20789717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 41555575 - 41555506
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    |||||| |||||||| |||| ||||||||||  |||| |||||||||||||||||| ||||  |||||||    
T  41555575 aagtaactataaggggtaaacttgtcaaattaagcttaaaaatttgagaaggtcaattattgcgggacaa 41555506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 39788106 - 39787992
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggac-aannnnnnnnnacaaatatgtcacttattca 148  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||| ||||||||||||| ||| || ||         ||||||| |||||||||| |    
T  39788106 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtggaacaaatatttttttacaaataggtcacttattta 39788007  T
Q  149 gagacggagggagta 163  Q
    |||||||||||||||    
T  39788006 gagacggagggagta 39787992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 3172222 - 3172275
Alignment:
Q  66 taaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    |||| |||||||||| |||||  ||||||||||| |||||||||| ||||||||    
T  3172222 taaatttgtcaaattctgcttagaaatttgagaaagtcaagtattgtgggacaa 3172275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 31922011 - 31922140
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 134  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||    
T  31922011 acatggagaccatacaagcaattataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaatttttttttacaaat 31922110  T
Q  135 atgtcacttattcagagacggagggagtaa 164  Q
    |||||||||||| || ||||||| ||||||    
T  31922111 atgtcacttatttagggacggagagagtaa 31922140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 25898591 - 25898461
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 134  Q
    |||||||||||||||||| ||||||||||  ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||         ||||||    
T  25898591 acatggagaccatacaagcaattataaggagtaaaattatcaaattttgctttaaaatttgagaaggtcgagtattttgggataatttttttttacaaat 25898492  T
Q  135 atgtcacttattcagagacggagggagtaag 165  Q
    | ||||||||||||| |||||||||||||||    
T  25898491 aggtcacttattcagggacggagggagtaag 25898461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 4828276 - 4828389
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| |||| ||||||||||||||||  ||||||||||||||||| |||| ||||||||         |||||||||||||||||| ||    
T  4828276 aagtatttataaggggtaaatttgtcaaattttgcttagaaatttgagaaggtcaaatattgtgggacaaatattttttacaaatatgtcacttattgag 4828375  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  4828376 ggacggagggagta 4828389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 45080605 - 45080718
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  45080605 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 45080704  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  45080705 ggacggagggagta 45080718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 2110333 - 2110219
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||| ||||||||||||| ||||||||         ||||||| |||||||||||||    
T  2110333 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 2110234  T
Q  150 agacggagggagtaa 164  Q
     ||||||||||||||    
T  2110233 ggacggagggagtaa 2110219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 16964929 - 16964862
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggac 117  Q
    ||||| ||||||||| |||| |||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  16964929 aagtatttataaggggtaaacttgtcaaattttacttaaaaatttgagaaggtcaagtattgtgggac 16964862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 43370787 - 43370673
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| | ||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  43370787 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 43370688  T
Q  150 agacggagggagtaa 164  Q
     ||||||||||||||    
T  43370687 ggacggagggagtaa 43370673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 29194101 - 29193988
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| |||||||          ||||||| |||||||||||||    
T  29194101 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacacattttttttacaaataggtcacttattcag 29194002  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  29194001 ggacggagggagta 29193988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 42847094 - 42847163
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||| |||| |||||||||| ||||| ||||| ||| ||||||||||||| ||||||||    
T  42847094 aagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgaaaaggtcaagtattatgggacaa 42847163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 8381503 - 8381572
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||| ||||  |||||||||||  ||  |||||||||||||||||||||  ||||||||    
T  8381503 aagtatttataaggggtaaatctgtcaaattttatttagaaatttgagaaggtcaagtatcgtgggacaa 8381572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 30459934 - 30459806
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 134  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||         ||||||    
T  30459934 acatggagaccatacaagcaattataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtatttagggacaatttttttttacaaat 30459835  T
Q  135 atgtcacttattcagagacggagggagta 163  Q
    | ||||||||||||| |||||||||||||    
T  30459834 aggtcacttattcagggacggagggagta 30459806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 48169837 - 48169724
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  48169837 aagtatttataagggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtattatgggacaaatattttttacaaataggtcacttattcag 48169738  T
Q  150 agacggagggagta 163  Q
    ||||||||||||||    
T  48169737 agacggagggagta 48169724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 50676588 - 50676475
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  ||||||||||||||| ||||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  50676588 aagtatttataaggggtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 50676489  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  50676488 ggacggagggagta 50676475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 12568195 - 12568309
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| |||||| |||||||||| ||||||||         |||||||||||||||||||||    
T  12568195 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtattgtgggacaaatattttttacaaatatgtcacttattcag 12568294  T
Q  150 agacggagggagtaa 164  Q
     ||||||||||||||    
T  12568295 ggacggagggagtaa 12568309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 13544659 - 13544773
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| |||||| |||||||||| ||||||||         |||||||||||||||||||||    
T  13544659 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaagtcaagtattgtgggacaaatattttttacaaatatgtcacttattcag 13544758  T
Q  150 agacggagggagtaa 164  Q
     ||||||||||||||    
T  13544759 ggacggagggagtaa 13544773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 54014350 - 54014236
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  54014350 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 54014251  T
Q  150 agacggagggagtaa 164  Q
     ||||||||||||||    
T  54014250 ggacggagggagtaa 54014236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 41346160 - 41346047
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  41346160 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 41346061  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  41346060 ggacggagggagta 41346047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 51545775 - 51545661
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  51545775 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 51545676  T
Q  150 agacggagggagtaa 164  Q
      |||||||||||||    
T  51545675 gaacggagggagtaa 51545661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 40496886 - 40496773
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||| ||  |||| ||||||||||||||||| ||||||||         ||||||| ||||||||||||     
T  40496886 aagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaa 40496787  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  40496786 ggacggagggagta 40496773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 24709123 - 24709054
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| |||||| |||||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  24709123 aagtatttataaaggataaatctgtcaaattttgcttataaatctgagaaggtcaagtattgtgggacaa 24709054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 163
Target Start/End: Original strand, 41346314 - 41346347
Alignment:
Q  130 caaatatgtcacttattcagagacggagggagta 163  Q
    |||||||||||||||||||| |||||||||||||    
T  41346314 caaatatgtcacttattcagggacggagggagta 41346347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 8e-37; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 33403322 - 33403193
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 134  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||         ||||||    
T  33403322 acatggagaccatacaagcaattataaggggtaaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttaggacaatttttttttacaaat 33403223  T
Q  135 atgtcacttattcagagacggagggagtaa 164  Q
    |  |||||||||||| ||||||||||||||    
T  33403222 agatcacttattcagggacggagggagtaa 33403193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 35 - 163
Target Start/End: Original strand, 36768761 - 36768889
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 134  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||         | ||||    
T  36768761 acatggagaccatacaagcaattataaggggtaaaattgtcaaattttgctttaaaatttgataaggtcgagtattttgggacaatttttttaaaaaaat 36768860  T
Q  135 atgtcacttattcagagacggagggagta 163  Q
    | ||||||||||||| |||||||||||||    
T  36768861 aggtcacttattcagggacggagggagta 36768889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 5712354 - 5712270
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    |||||||||||||||||| |||||||| || | |||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  5712354 acatggagaccatacaagcaattataaagggtgaaattgtcaaattttgctttaaaatttgagaaggtcaattattttaggacaa 5712270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 36982299 - 36982185
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  ||||||||||||| |  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  36982299 aagtatttataaggggtaaatctgtcaaattttgcctagaaatatgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 36982200  T
Q  150 agacggagggagtaa 164  Q
     ||||||||||||||    
T  36982199 ggacggagggagtaa 36982185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 14044169 - 14044055
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||| | ||||  |||||||||||||||  |||| |||||||||||| |||| ||||||||         ||||||| |||||||||||||    
T  14044169 aagtatttataagaggtaaatctgtcaaattttgcttagaaatctgagaaggtcaaatattatgggacaaatattttttacaaataggtcacttattcag 14044070  T
Q  150 agacggagggagtaa 164  Q
     ||||||||||||||    
T  14044069 ggacggagggagtaa 14044055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 42897561 - 42897630
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  42897561 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaa 42897630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 2970851 - 2970920
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||| ||| |||| |||||||||| |||||  ||||||||||| |||||||||| ||||||||    
T  2970851 aagtatttatacggggtaaatttgtcaaattctgcttagaaatttgagaatgtcaagtattgtgggacaa 2970920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 22337839 - 22337710
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa-nnnnnnnnnacaaa 133  Q
    |||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||          |||||    
T  22337839 acatggagaccatacaagcaattataaggggtaaaattgtcaatttttgctttaaaatttgagaaggtcaagtattttgggacaattttttttttacaaa 22337740  T
Q  134 tatgtcacttattcagagacggagggagta 163  Q
    || ||||||||||||| |||||||||||||    
T  22337739 taggtcacttattcagggacggagggagta 22337710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 35 - 163
Target Start/End: Complemental strand, 22619652 - 22619524
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 134  Q
    ||||||||||||||| || ||||||||||  | ||||||||||||||||||||||||||||||||| ||||||||||||  ||||         ||||||    
T  22619652 acatggagaccatactagcaattataaggagtcaaattgtcaaattttgctttaaaatttgagaagatcaagtattttgaaacaattttattttacaaat 22619553  T
Q  135 atgtcacttattcagagacggagggagta 163  Q
    | |||||||||||||  ||||||||||||    
T  22619552 aggtcacttattcaggaacggagggagta 22619524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 4041062 - 4040946
Alignment:
Q  48 acaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattc 147  Q
    ||||||| ||||||||| ||||   ||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||    
T  4041062 acaagtatttataaggggtaaatccgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattc 4040963  T
Q  148 agagacggagggagtaa 164  Q
    |||||||||||||||||    
T  4040962 agagacggagggagtaa 4040946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 24300331 - 24300445
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||||||| ||||||||||||| ||||||||         ||||||| ||||||||||||     
T  24300331 aagtatttataaggggtaaatctgtcaaattttgcttagaaatttgataaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaa 24300430  T
Q  150 agacggagggagtaa 164  Q
    |||||||||||||||    
T  24300431 agacggagggagtaa 24300445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 25943818 - 25943943
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaat 134  Q
    |||||| ||||||| ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||    
T  25943818 acatggggaccata-aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaat 25943916  T
Q  135 atgtcacttattcagagacggagggag 161  Q
    | ||||||||||||| |||||||||||    
T  25943917 aggtcacttattcagggacggagggag 25943943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 40232302 - 40232415
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||||||||||||||||||||| ||||||||         ||||||| ||||||||||||     
T  40232302 aagtatttataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaa 40232401  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  40232402 ggacggagggagta 40232415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 29737518 - 29737405
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| | ||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  29737518 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 29737419  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  29737418 ggacggagggagta 29737405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 21442985 - 21443054
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| |||||||||||||| |||||||||| | ||| ||||| ||||||||||||||||| ||||||||    
T  21442985 aagtatttataagggataaatttgtcaaattctacttaaaaatctgagaaggtcaagtattgtgggacaa 21443054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 27596272 - 27596385
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| |||||| || ||||  ||||||||||||| |  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  27596272 aagtatttataaagggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 27596371  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  27596372 ggacggagggagta 27596385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 31689547 - 31689653
Alignment:
Q  57 tataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacgga 156  Q
    |||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| |||||||          ||||||| ||||||||||||| |||| |    
T  31689547 tataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacagatattttttacaaataggtcacttattcagggacgaa 31689646  T
Q  157 gggagta 163  Q
    |||||||    
T  31689647 gggagta 31689653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 6392384 - 6392315
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||| ||||||| ||||||||    
T  6392384 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtaaagtattgtgggacaa 6392315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 8577757 - 8577715
Alignment:
Q  76 aaattttgctttaaaatttgagaaggtcaagtattttgggaca 118  Q
    ||||||||||| ||||||||||||||| ||| |||||||||||    
T  8577757 aaattttgcttgaaaatttgagaaggtaaagaattttgggaca 8577715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 41427835 - 41427948
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||| |||| |||| ||||||||         ||||||| |||||||||| |     
T  41427835 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatattgtgggacaaatattttttacaaataggtcacttatttaa 41427934  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  41427935 ggacggagggagta 41427948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 38276732 - 38276801
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||| ||||  ||||||||| |||||  |||| ||| ||||||||||||| ||||||||    
T  38276732 aagtatttataaggggtaaatctgtcaaattctgcttagaaatatgaaaaggtcaagtattgtgggacaa 38276801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 46371040 - 46370926
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| |||| ||||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  46371040 aagtatttataaggggtaaatttgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 46370941  T
Q  150 agacggagggagtaa 164  Q
     ||||||||||||||    
T  46370940 ggacggagggagtaa 46370926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 46862669 - 46862555
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  ||||||||||||||| ||||| | ||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  46862669 aagtatttataaggggtaaatctgtcaaattttgcttaaaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 46862570  T
Q  150 agacggagggagtaa 164  Q
     ||||||||||||||    
T  46862569 ggacggagggagtaa 46862555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 28036888 - 28037001
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||| ||||| ||    
T  28036888 aagtatttataagggataaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcatttattaag 28036987  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  28036988 ggacggagggagta 28037001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 1929409 - 1929516
Alignment:
Q  56 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacgg 155  Q
    ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||| || |||||    
T  1929409 ttataaggggtaaatctgtcaaattttgcttagaaatatgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttatttagggacgg 1929508  T
Q  156 agggagta 163  Q
    ||||||||    
T  1929509 agggagta 1929516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 39151084 - 39151197
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| | ||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  39151084 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctaagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 39151183  T
Q  150 agacggagggagta 163  Q
     ||||||| |||||    
T  39151184 ggacggagagagta 39151197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 50777110 - 50776997
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||||| ||||||||||||||| ||||||||         ||||||| |||||||||| ||    
T  50777110 aagtatttataaggggtaaatctgtcaaattttgcttagaaatttaagaaggtcaagtattatgggacaaatattttttacaaataagtcacttatttag 50777011  T
Q  150 agacggagggagta 163  Q
    ||||| || |||||    
T  50777010 agacgaagagagta 50776997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 8229176 - 8229063
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| |||| |||||||||||||||| ||||| | ||||||| |||||||  || ||||         | ||||| |||||||||||||    
T  8229176 aagtatttataaggggtaaatttgtcaaattttgcttaaaaatctaagaaggttaagtattgaggaacaaatattttttataaataggtcacttattcag 8229077  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  8229076 ggacggagggagta 8229063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 32045946 - 32045833
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  | |||||||||||||  |||| ||||||||||||||||| ||| ||||         |||||||  ||||||||||||    
T  32045946 aagtatttataaggggtaaatctttcaaattttgcttagaaatctgagaaggtcaagtattgtggaacaaatattttttacaaatagatcacttattcag 32045847  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  32045846 ggacggagggagta 32045833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 38321758 - 38321645
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  | | |||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||| ||||||||    
T  38321758 aagtatttataagggttaaatcttttaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcagttattcag 38321659  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  38321658 ggacggagggagta 38321645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 38817887 - 38817818
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||| |||| || |||||||||||||  ||||||||||| ||||| |||| ||||||||    
T  38817887 aagtatttataaggggtaaatttatcaaattttgcttagaaatttgagaaagtcaaatattatgggacaa 38817818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 1929250 - 1929216
Alignment:
Q  130 caaatatgtcacttattcagagacggagggagtaa 164  Q
    |||||||||||||||||||| ||||||||||||||    
T  1929250 caaatatgtcacttattcagggacggagggagtaa 1929216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 69866 - 69753
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||| | ||||  |||||||||||||||  |||||||||||||||||||||| ||||||||         |||||||||||||||||||||    
T  69866 aagtatttataagcggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaatatgtcacttattcag 69767  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  69766 ggacggagggagta 69753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 11146897 - 11146820
Alignment:
Q  35 acatggagaccatacaagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttg 113  Q
    |||||||| ||||||||| ||||||||||  |||||||||||||||||| |||||||||||| ||||||||||||||||    
T  11146897 acatggag-ccatacaagcaattataaggagtaaaattgtcaaattttgttttaaaatttgataaggtcaagtattttg 11146820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 18575141 - 18575027
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||| |||||| ||||||||||||||||  |||| |||||||||| |||||| ||||||||         ||||||| |||||||||||||    
T  18575141 aagtatttataagagataaatttgtcaaattttgcttagaaatctgagaaggtcgagtattgtgggacaatttttttttacaaataggtcacttattcag 18575042  T
Q  150 agacggagggagtaa 164  Q
     ||||||||||||||    
T  18575041 ggacggagggagtaa 18575027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 27820886 - 27820773
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  27820886 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 27820787  T
Q  150 agacggagggagta 163  Q
     ||| |||||||||    
T  27820786 ggacagagggagta 27820773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 11254613 - 11254500
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| |||||| || ||||  |||||||||||||||  |||| ||| ||||||||||||| ||||||||         ||||||| |||||||||||||    
T  11254613 aagtatttataaagggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtgggacaatttttttttacaaataggtcacttattcag 11254514  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  11254513 ggacggagggagta 11254500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 39907023 - 39906954
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  39907023 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattgtgggacaa 39906954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 9753877 - 9753814
Alignment:
Q  56 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||||| | |||| |||||||||| |||||  |||||||||||||||||||||| ||||||||    
T  9753877 ttataagaggtaaatttgtcaaattctgcttagaaatttgagaaggtcaagtattatgggacaa 9753814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 38070082 - 38070196
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| |||||| || ||||  ||||||||||||| |  |||| ||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  38070082 aagtatttataatgggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 38070181  T
Q  150 agacggagggagtaa 164  Q
     ||| ||||||||||    
T  38070182 ggacagagggagtaa 38070196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 17493639 - 17493526
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  |||||||||||| ||  |||| ||||||| ||||||||| ||||||||         ||||||| |||||||||||||    
T  17493639 aagtatttataaggggtaaatctgtcaaattttgtttagaaatctgagaagatcaagtattgtgggacaaatattttttacaaataggtcacttattcag 17493540  T
Q  150 agacggagggagta 163  Q
     |||||||| ||||    
T  17493539 ggacggaggaagta 17493526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 12738559 - 12738622
Alignment:
Q  56 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||||||| |||| |||||||||| |||||  |||| ||| ||||||||||||| ||||||||    
T  12738559 ttataaggggtaaatttgtcaaattctgcttagaaatctgataaggtcaagtattatgggacaa 12738622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 17336157 - 17336226
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||| ||||  ||||||||| |||||  |||| | ||||||||||||||| ||||||||    
T  17336157 aagtatttataaggggtaaatctgtcaaattctgcttagaaatctaagaaggtcaagtattatgggacaa 17336226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 13243733 - 13243793
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtatt 110  Q
    ||||| ||||||||| | || |||||||||| |||||  ||||||||||||||||| ||||    
T  13243733 aagtatttataaggggtgaatttgtcaaattctgcttagaaatttgagaaggtcaaatatt 13243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 16470 - 16357
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| |||||| || ||||  |||||||||||||||  |||||||||||||||||||||| ||||||||         ||||||| |||||||||||||    
T  16470 aagtatttataaagggtaaatctgtcaaattttgcttagaaatttgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcag 16371  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  16370 ggacggagggagta 16357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 13042085 - 13041972
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  ||||||||||||||| ||||| ||||||||||||||||| ||||||||         ||||||| ||||||||||||     
T  13042085 aagtatttataaggggtaaatctgtcaaattttgcttaaaaatctgagaaggtcaagtattgtgggacaaatattttttacaaataggtcacttattcaa 13041986  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  13041985 ggacggagggagta 13041972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 12350378 - 12350271
Alignment:
Q  57 tataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcagagacgga 156  Q
    |||||||| ||||  |||||||||||||||  ||||||||||||||||| |||| ||||||||         ||||||| ||||||||||||||||||||    
T  12350378 tataaggggtaaatctgtcaaattttgcttagaaatttgagaaggtcaaatattgtgggacaaatactttttacaaataggtcacttattcagagacgga 12350279  T
Q  157 gggagtaa 164  Q
    || |||||    
T  12350278 ggaagtaa 12350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 28541774 - 28541887
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||| ||||  ||||||||||||| |  |||| ||||||||||||||||| ||||| ||         ||||||| |||||||||||||    
T  28541774 aagtatttataaggggtaaatctgtcaaattttgcctagaaatctgagaaggtcaagtattgtgggataaatattttttacaaataagtcacttattcag 28541873  T
Q  150 agacggagggagta 163  Q
    ||||||||||||||    
T  28541874 agacggagggagta 28541887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 31833752 - 31833821
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| || ||||||||||| |||||||||| ||||| ||||| ||||||||||||||||  ||||||||    
T  31833752 aagtatttttaagggataaatttgtcaaattatgcttaaaaatctgagaaggtcaagtatcgtgggacaa 31833821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 1870647 - 1870587
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtatt 110  Q
    ||||| ||||||||| |||| |||||||||| ||||| ||||| |||||||||||||||||    
T  1870647 aagtatttataaggggtaaatttgtcaaattctgcttaaaaatctgagaaggtcaagtatt 1870587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 1241222 - 1241109
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||| | ||||  |||||||||||||||  |||| ||||||| ||||||||| ||||||||         |||||||  ||||||||||||    
T  1241222 aagtatttataagaggtaaatctgtcaaattttgcttagaaatctgagaagttcaagtattgtgggacaaatattttttacaaatagatcacttattcag 1241123  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  1241122 ggacggagggagta 1241109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 13210451 - 13210397
Alignment:
Q  56 ttataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtatt 110  Q
    |||||| || |||| |||||||||| ||||| |||||||||||||||||||||||    
T  13210451 ttataatgggtaaatttgtcaaattctgcttaaaaatttgagaaggtcaagtatt 13210397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 16435892 - 16435823
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||| ||| ||||  ||||||||||| |||  |||||||||||||||||||||| ||||||||    
T  16435892 aagtatttatatggggtaaatctgtcaaattttccttagaaatttgagaaggtcaagtattgtgggacaa 16435823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 7271265 - 7271334
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||| ||||  ||||||||| |||||  |||| | ||||||||||||||| ||||||||    
T  7271265 aagtatttataaggggtaaatctgtcaaattctgcttagaaatctaagaaggtcaagtattatgggacaa 7271334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 30736532 - 30736463
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||||| ||||  |||||||||||||||  |||| ||||||| |||| |||| ||||||||    
T  30736532 aagtatttataaggggtaaatctgtcaaattttgcttagaaatctgagaagatcaaatattgtgggacaa 30736463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 10204 - 10317
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| ||||||||||||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||         |||||||  ||||||||||||    
T  10204 aagtatttataagggataaatctgtcaaattttgcttagaaatatgagaaggtcaagtattgtgggacaaatattttttacaaatagatcacttattcag 10303  T
Q  150 agacggagggagta 163  Q
      ||||||||||||    
T  10304 gaacggagggagta 10317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 10780 - 10893
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaannnnnnnnnacaaatatgtcacttattcag 149  Q
    ||||| |||||| || ||||  |||||||||||||||  |||| ||| ||||||||||||| ||||||||         ||||||| |||||||||||||    
T  10780 aagtatttataaagggtaaatctgtcaaattttgcttagaaatctgataaggtcaagtattgtgggacaatttttttttacaaataggtcacttattcag 10879  T
Q  150 agacggagggagta 163  Q
     |||||||||||||    
T  10880 ggacggagggagta 10893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 3927 - 3858
Alignment:
Q  50 aagtaattataagggataaaattgtcaaattttgctttaaaatttgagaaggtcaagtattttgggacaa 119  Q
    ||||| ||||||| | ||||  |||||||||||||||  |||| ||||||||||||||||| ||||||||    
T  3927 aagtatttataagaggtaaatctgtcaaattttgcttagaaatctgagaaggtcaagtattatgggacaa 3858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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