View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15410_low_9 (Length: 315)
Name: NF15410_low_9
Description: NF15410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15410_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 25306824 - 25306530
Alignment:
| Q |
13 |
ataaacatacttaggctccttgatgaaaatcaatcttaacagtggnnnnnnncaatggttcatttctcattactctctggcaggttttataacttttatt |
112 |
Q |
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| T |
25306824 |
ataaacatacttaggctccttaatgaaaatcaatcttaacagtggtttttttcaatggttcatttctcattactct--ggcaggttttataacttttatt |
25306727 |
T |
|
| Q |
113 |
gaaccactcttcaagacactaaccactccaacatgnnnnnnnnccttggattttccttttatcaagataattgatagatgcaaattctcatcttttactt |
212 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25306726 |
gaaccactcttcaagacactaaccactccaacatgttttttttccttggattttccttttatcaagataatttatagatgcaaattctcatcttttactt |
25306627 |
T |
|
| Q |
213 |
cacgatgttcacatgtagcatcaatatgttctctacgggtactatattttgttaacaaatctattatccacatcacaacaaatcacatattcttcga |
309 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
25306626 |
cacggtgttcacatgtagcatcaatatgttctctacgggtactatattttgttaacaaatctattatccacatcacaacaaatcacatctttttcga |
25306530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 166 - 292
Target Start/End: Complemental strand, 25277996 - 25277867
Alignment:
| Q |
166 |
tccttttatcaagataattgata--gatgcaaattctcatctttt-acttcacgatgttcacatgtagcatcaatatgttctctacgggtactatatttt |
262 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
25277996 |
tccttttatcaagataatttatatagatgcaaattctcatctttttacttcacgttgttcacatttagcatccatatgttctctacgggtactatatttt |
25277897 |
T |
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| Q |
263 |
gttaacaaatctattatccacatcacaaca |
292 |
Q |
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||||| |||||||| ||||||||||||||| |
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| T |
25277896 |
gttaaaaaatctataatccacatcacaaca |
25277867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 25278200 - 25278084
Alignment:
| Q |
29 |
tccttgatgaaaatcaatcttaacagtggnnnnnnncaatggttcatttctcattactctctggcaggttttataacttttattgaaccactcttcaaga |
128 |
Q |
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||||| ||||||||||||||||| |||| |||| |||| |||||||| ||||| | |||||||||||||||||||||||| |||||||||| |
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| T |
25278200 |
tccttaatgaaaatcaatcttaagagtgctttttttcaatagttcctttctcatcactct--gaaaggttttataacttttattgaacccctcttcaaga |
25278103 |
T |
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| Q |
129 |
cactaaccactccaacatg |
147 |
Q |
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|||||||| |||||||||| |
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| T |
25278102 |
cactaacccctccaacatg |
25278084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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