View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15411_low_1 (Length: 547)
Name: NF15411_low_1
Description: NF15411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15411_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 21 - 529
Target Start/End: Complemental strand, 35107041 - 35106533
Alignment:
| Q |
21 |
taaaagaaatgttagaacttgcaacaaggacaatttttcatttgagaggaccatatattgttgaattctcaaggaggtgggggaccatatattattaaat |
120 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35107041 |
taaaagaaatgttacaacttgcaacaaggacaatttttcatttgagaggaccatatattgttgaattctcaagaaggtgggggaccatatattattaaat |
35106942 |
T |
|
| Q |
121 |
tttcaaatagtattgatcgataattcttaagtataatataacccgagtttgaagagaaaaaagtcgacttactagcttcatgagaatcagacaatgccat |
220 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106941 |
tttcaaatagtattgatcgacaattcttaagtataatataacccgagtttgaagagaaaaaagtcgacttactagcttcatgagaatcagacaatgccat |
35106842 |
T |
|
| Q |
221 |
gcgactctctcgtcccaaatctatgacttccatgaaactaaagattgggacctccttattttcttcagcgatcagattcaggtctgatttttctccccaa |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106841 |
gcgactctctcgtcccaaatctatgacttccatgaaactaaagattgggacctccttattttcttcagcgatcagattcaggtctgatttttctccccaa |
35106742 |
T |
|
| Q |
321 |
agcaaaataataaatctcatgccagtctttgaatagaatggttttgcaattcggataaacatttcagggccatccacggctagtgcaacactgaagtcac |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106741 |
agcaaaataataaatctcatgccagtctttgaatagaatggttttgcaattcggttaaacatttcagggccatccacggctagtgcaacactgaagtcac |
35106642 |
T |
|
| Q |
421 |
caatgaagattgagcattaacaaagattgccaaaacaaaaggttaacatataatgaacaatttgttgagaattgttagcagttataacacacaatcttag |
520 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35106641 |
caatgaagattgagcattaacaatgattgccaaaacaaaaggttaacatataatgaacaatttgttgagaattgttagcagttataacacacaatcttag |
35106542 |
T |
|
| Q |
521 |
ccatacaat |
529 |
Q |
| |
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|||||||| |
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| T |
35106541 |
tcatacaat |
35106533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 412
Target Start/End: Original strand, 38121810 - 38121917
Alignment:
| Q |
305 |
tgatttttctccccaaagcaaaataataaatctcatgccagtctttgaatagaatggttttgcaattcggataaacatttcagggccatccacggctagt |
404 |
Q |
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|||||||||||||||||||| |||||||||||| || ||||| |||| |||||||||||||| | || |||||||||| ||||| |||||| |
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| T |
38121810 |
tgatttttctccccaaagcagaataataaatctgattgaggtcttcaaataaaatggttttgcaatctgattatacatttcaggattgtccacagctagt |
38121909 |
T |
|
| Q |
405 |
gcaacact |
412 |
Q |
| |
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|||||||| |
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| T |
38121910 |
gcaacact |
38121917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 20440557 - 20440586
Alignment:
| Q |
1 |
accaaaagtgtaattaagcctaaaagaaat |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
20440557 |
accaaaagtgtaattaagcctaaaagaaat |
20440586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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