View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15411_low_2 (Length: 396)
Name: NF15411_low_2
Description: NF15411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15411_low_2 |
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| [»] scaffold0554 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 23036571 - 23036942
Alignment:
| Q |
18 |
acctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagcaaatccaagaatgtttaaggcgatatataaaaaga-aactaacaaatagc |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | ||||| |
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| T |
23036571 |
acctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagcaaatccaagaatctttaaggcgatatataaaaagacaactagtagatagc |
23036670 |
T |
|
| Q |
117 |
atccaatgctacagagtagagatataagatgcaagcagattttaactattcacctaaatttttcttttgaaaagtagtttttcttcttcgaagtatttgg |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23036671 |
atccaatgctacagagtagagatataagatgcgagcagattttaattattcatctaaatttttcttttgtaaagtagtttttcttcttcgaagtatttgg |
23036770 |
T |
|
| Q |
217 |
aaagttaattcgcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacgtctacca |
316 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |
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| T |
23036771 |
aaagttaattcgcttaccattattatggccttgatattgttttttgtcaaggaaaggtcttggtttctgccatcctcgtaatttaagagaacgtctacga |
23036870 |
T |
|
| Q |
317 |
gatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
388 |
Q |
| |
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|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23036871 |
gatcttcttctactctaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
23036942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 23039442 - 23039819
Alignment:
| Q |
18 |
acctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagcaa----atccaagaatgtttaaggcgatatataaaaaga-aactaacaaa |
112 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||||| ||| | |||||||||||||| ||| || |
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| T |
23039442 |
acctccagcaccaaaaacgtcctgaaaagtagctatcaataaggtcaagcaagctaatccaagaatgtctaaagtgatatataaaaagacaacatgcatg |
23039541 |
T |
|
| Q |
113 |
tagcatccaatgctacagagtagagatataagatgcaagcagattttaactattcacctaaatttttcttttgaaaagtagtttttcttcttcgaa-gta |
211 |
Q |
| |
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|||||||||||| |||| | | | ||||||||||| | || |||| | ||| | |||||||| || | ||| ||||||||| ||| ||| ||| |
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| T |
23039542 |
tagcatccaatgttacaaacaataaatataagatgcgggaaggttttcaatataaatttaaattttactggagtaaacaagtttttct-ctttgaatgta |
23039640 |
T |
|
| Q |
212 |
tttggaaa--gttaattcgcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacg |
309 |
Q |
| |
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|||| || ||||||| |||||||| ||||||||||||||||||||||||||| |||| || || ||||| ||||| ||||| || ||||| |||||| |
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| T |
23039641 |
tttgaaagaggttaatttgcttaccaggattatggccttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacg |
23039740 |
T |
|
| Q |
310 |
tctaccagatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
388 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23039741 |
tctacgagatcttcttctactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
23039819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 388
Target Start/End: Original strand, 23146321 - 23146694
Alignment:
| Q |
18 |
acctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagcaaatccaagaatgtttaaggcgatatataaaaaga-aactaacaaatagc |
116 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| |||| | |||| ||||||||||||| | | | ||||||||||||| ||| || ||||| |
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| T |
23146321 |
acctccagcagcaaaaatgtcctgtaaagtagctatcaataaggttaagctaatccaagaatgtcttaagtgatatataaaaagtcaacatgcatatagc |
23146420 |
T |
|
| Q |
117 |
atccaatgctacagagtagagatataagatgcaagcagattttaactattcacctaaatttttcttttgaaaagtagtttttcttcttcgaa-gtatttg |
215 |
Q |
| |
|
|||||| |||||||| || |||||||||| | || |||| | | | |||||||| || | ||| ||||||||| ||| ||| ||||||| |
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| T |
23146421 |
atccaacgctacagatatgacatataagatgtgggaaggttttcaattaaaatttaaattttactggagtaaacaagtttttct-ctttgaatgtatttg |
23146519 |
T |
|
| Q |
216 |
gaa-ag-ttaattcgcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacgtcta |
313 |
Q |
| |
|
||| || |||||| |||||||| ||||||||||||||||||||||||||| |||| || || ||||| ||||| ||||| || ||||| |||||||||| |
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|
| T |
23146520 |
gaagagattaatttgcttaccaggattatggccttgatattgttttttgttaaggtaaactcctggttgctaccgtcctcatattttaagagaacgtcta |
23146619 |
T |
|
| Q |
314 |
ccagatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
388 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23146620 |
tcagatcttcttctactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
23146694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 229 - 388
Target Start/End: Original strand, 23017869 - 23018028
Alignment:
| Q |
229 |
cttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacgtctaccagatcttcttcca |
328 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| || || | ||||||| ||||||||||| || ||||| |||| |||||||||||||||| | | |
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|
| T |
23017869 |
cttaccaagattatggccttgatattgtcttttgttaatgagaaatcttggtcactaccatcctcatattttaagagaatgtctaccagatcttctgcta |
23017968 |
T |
|
| Q |
329 |
ctttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
388 |
Q |
| |
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| | |||||||||| ||||| ||||||||||||||||| |||||| |||| ||||||| |
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| T |
23017969 |
cctcaccttgatcacctttgacttttgtgtacttttcccttttatgttcatcaatgatgt |
23018028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 207 - 388
Target Start/End: Original strand, 23033451 - 23033625
Alignment:
| Q |
207 |
aagtatttggaa-agttaatt-cgcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaaca |
304 |
Q |
| |
|
|||||||||||| |||| ||| ||||||||| |||||| ||||||||||||| |||||| ||| | | ||||||| ||||||||||| || ||||| | |
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|
| T |
23033451 |
aagtatttggaagagtttattacgcttaccaagattatagccttgatattgtcttttgttaagaagaaatcttggtcactaccatcctcatattttaaga |
23033550 |
T |
|
| Q |
305 |
gaacgtctaccagatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
388 |
Q |
| |
|
||| |||||||||||||||| | || |||||||| ||| |||||||||||| ||| ||||||||||| |||||||| |
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|
| T |
23033551 |
gaatgtctaccagatcttctactaccttaccttg---------ggcgtttgtgtactttgcctttttatgctcatcgatgatgt |
23033625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 23033101 - 23033157
Alignment:
| Q |
19 |
cctccagcaccaaaaatgtcctgaaaagtagctatcagtaagttcaagcaaatccaa |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| |
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|
| T |
23033101 |
cctccagcaccaaaaatgtcctgaaaagtagctatcaataaggtcaaccaaatccaa |
23033157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 322
Target Start/End: Original strand, 23149496 - 23149589
Alignment:
| Q |
229 |
cttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacgtctaccagatctt |
322 |
Q |
| |
|
||||||| |||||||||||||||||||| ||| |||||| ||| || | ||| || ||||| || || |||| ||||| ||||||||||||| |
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|
| T |
23149496 |
cttaccaagattatggccttgatattgtctttggtcaagaaaaattccttgttgctgccatcttcatattttatgagaacatctaccagatctt |
23149589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 195 - 388
Target Start/End: Original strand, 21780514 - 21780709
Alignment:
| Q |
195 |
ttttcttcttcgaagtatttggaa-ag-ttaattcgcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcct |
292 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| ||||||||| ||||||||||||||||||| |||||| ||||||| || |||| |||||||||| |
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|
| T |
21780514 |
ttttcttcttcgaagtatttggaagagattaattggcttaccattattatggccttgatattgtcttttgttaaggaaaaatccaggttgctaccatcct |
21780613 |
T |
|
| Q |
293 |
cgtaatttaacagaacgtctaccagatcttcttccactttaccttgatcatctttggcttttgtgtacttttcctctttatgctcattgatgatgt |
388 |
Q |
| |
|
| || ||||| ||||||||||| ||||||||||| |||| ||||| ||| ||||| | |||||||| |||| |||||||||| || |||||||||| |
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|
| T |
21780614 |
catattttaagagaacgtctacgagatcttcttctacttcaccttcatcttctttcggttttgtgtgctttgcctctttatggtccttgatgatgt |
21780709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 21780214 - 21780246
Alignment:
| Q |
18 |
acctccagcaccaaaaatgtcctgaaaagtagc |
50 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
21780214 |
acctccagcaccaaacatgtcctgaaaagtagc |
21780246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 326
Target Start/End: Complemental strand, 5901 - 5803
Alignment:
| Q |
228 |
gcttaccatgattatggccttgatattgttttttgtcaaggaaaggtcttggtttctaccatcctcgtaatttaacagaacgtctaccagatcttcttc |
326 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||| ||||||| || | ||| |||||||| || || ||||| |||||||||| ||||||||||| |
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|
| T |
5901 |
gcttaccatgataatggctttgatattgtcttttgttaaggaaaactccttgttgctaccatcttcatattttaagagaacgtctaatagatcttcttc |
5803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 6353 - 6317
Alignment:
| Q |
18 |
acctccagcaccaaaaatgtcctgaaaagtagctatc |
54 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||| |
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|
| T |
6353 |
acctccagcaccaaaaatgtcctaaaaagtagctatc |
6317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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