View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15411_low_3 (Length: 285)

Name: NF15411_low_3
Description: NF15411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15411_low_3
NF15411_low_3
[»] chr7 (3 HSPs)
chr7 (19-274)||(32413543-32413802)
chr7 (144-216)||(45498200-45498272)
chr7 (143-205)||(6889134-6889196)
[»] chr6 (8 HSPs)
chr6 (108-216)||(7115535-7115647)
chr6 (108-216)||(7120607-7120719)
chr6 (108-216)||(7124011-7124123)
chr6 (111-205)||(8656643-8656741)
chr6 (115-205)||(7175430-7175524)
chr6 (131-216)||(7140752-7140837)
chr6 (131-216)||(8680366-8680451)
chr6 (135-176)||(33844310-33844351)
[»] chr8 (1 HSPs)
chr8 (19-192)||(27701806-27701983)
[»] chr3 (9 HSPs)
chr3 (131-228)||(7104294-7104391)
chr3 (117-235)||(4149545-4149667)
chr3 (117-235)||(4165317-4165439)
chr3 (141-228)||(2996512-2996599)
chr3 (138-205)||(7177938-7178005)
chr3 (131-216)||(476016-476101)
chr3 (131-169)||(25601731-25601769)
chr3 (102-216)||(7125904-7126021)
chr3 (131-228)||(7177801-7177898)
[»] chr1 (1 HSPs)
chr1 (144-216)||(14288925-14288997)
[»] chr4 (3 HSPs)
chr4 (131-238)||(3978055-3978162)
chr4 (136-168)||(29676507-29676539)
chr4 (131-207)||(52186813-52186889)
[»] chr5 (3 HSPs)
chr5 (131-207)||(25064237-25064313)
chr5 (170-235)||(38142201-38142266)
chr5 (164-216)||(7022045-7022097)
[»] chr2 (1 HSPs)
chr2 (131-192)||(43864075-43864136)
[»] scaffold0896 (1 HSPs)
scaffold0896 (111-176)||(1474-1543)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 32413802 - 32413543
Alignment:
Q  19 gttgagtcatttcgaagagacaaaactcgagacacgaatttcgcgaatctcttgacatttctaaagtctgaagaccttaacgcaagggatggaagacgct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32413802 gttgagtcatttcgaagagacaaaactcgagacacgaatttcgcgaatctcttgacatttctaaagtctgaagaccttaacgcaagggatggaagacgct 32413703  T
Q  119 tccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatc 214  Q
    ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32413702 tccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatc 32413603  T
Q  215 accgagtctgtcttgattttcgctattattgctgttatgttcaagctttcgtttcttcat 274  Q
    || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32413602 actgagtctgtcttgattttcactattattgctgttatgttcaagctttcgtttcttcat 32413543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 45498200 - 45498272
Alignment:
Q  144 atgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 216  Q
    ||||||||||||||||||  |||||| |||||| | || |  |||||||||||||| ||||||| ||||||||    
T  45498200 atgcaagtttgaacggcgcatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac 45498272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 6889196 - 6889134
Alignment:
Q  143 aatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 205  Q
    ||||||||||||||| |||| | |||||| |||| | |||||||||||||| | |||||||||    
T  6889196 aatgcaagtttgaacagcgtctatggtgtccaaaaaagagagtatgtgaagaataacacaatc 6889134  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 7115535 - 7115647
Alignment:
Q  108 tggaagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaa 203  Q
    |||||||| ||||||||||||||||    || |||||||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  7115535 tggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaa 7115634  T
Q  204 tcagataaatcac 216  Q
    |||| ||||||||    
T  7115635 tcaggtaaatcac 7115647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 7120607 - 7120719
Alignment:
Q  108 tggaagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaa 203  Q
    |||||||| ||||||||||||||||    || |||||||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  7120607 tggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaa 7120706  T
Q  204 tcagataaatcac 216  Q
    |||| ||||||||    
T  7120707 tcaggtaaatcac 7120719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 7124011 - 7124123
Alignment:
Q  108 tggaagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaa 203  Q
    |||||||| ||||||||||||||||    || |||||||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||    
T  7124011 tggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaa 7124110  T
Q  204 tcagataaatcac 216  Q
    |||| ||||||||    
T  7124111 tcaggtaaatcac 7124123  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 8656643 - 8656741
Alignment:
Q  111 aagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 205  Q
    ||||||||||||||||||||||    || ||| |||||  ||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||||    
T  8656643 aagacgcttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatc 8656741  T

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Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 205
Target Start/End: Original strand, 7175430 - 7175524
Alignment:
Q  115 cgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 205  Q
    ||||||||||||||||||    | ||||| ||||||||||||||||| ||||| ||||| || ||  ||||||||||||||||||||||||||||    
T  7175430 cgcttccagagattcttccatctagtggataaaatgcaagtttgaactgcgtgcttggtttttaacaaggagagtatgtgaagtaaaacacaatc 7175524  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 7140752 - 7140837
Alignment:
Q  131 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 216  Q
    |||| |||||||||| ||||||||||| |||| ||| || |||||| | ||||||||||||||||||||||| || | ||||||||    
T  7140752 tcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcgggtaaatcac 7140837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 8680366 - 8680451
Alignment:
Q  131 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 216  Q
    |||| |||||||||| ||||||||||| |||| ||| || |||||| | ||||||||||||||||||||||| || | ||||||||    
T  8680366 tcttttggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaagtaaaacacagtcggctaaatcac 8680451  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 176
Target Start/End: Original strand, 33844310 - 33844351
Alignment:
Q  135 gtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaa 176  Q
    |||||||||||||||||||||||||||| || ||| ||||||    
T  33844310 gtggacaaaatgcaagtttgaacggcgttttcggttttcaaa 33844351  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 27701806 - 27701983
Alignment:
Q  19 gttgagtcatttcgaagagacaaaactcgagacacgaatttcgcgaatctcttgacatttctaaagtctgaagaccttaacgcaagggatggaagacgct 118  Q
    ||||||||||  |||||||||||||| |||||||||||||| |  || ||||||| | || |||||| ||| ||  ||||   ||||| ||||||||| |    
T  27701806 gttgagtcatcgcgaagagacaaaacccgagacacgaatttggtaaaactcttgagagttttaaagtgtgaggagtttaatctaagggttggaagacgtt 27701905  T
Q  119 tccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaa 192  Q
    |||||||||| |||    ||||||| | ||||  |||||||||||| |||||||| |  |||||||||||||||||||    
T  27701906 tccagagattgttccatcttgtggaaagaatggtagtttgaacggcatgtttggtttctaaagaggagagtatgtgaa 27701983  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 7104294 - 7104391
Alignment:
Q  131 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtctt 228  Q
    |||||| ||||||| ||| ||||||||||| |||||||| | |||||||||||||||| |||| | |||||| || |  ||||||| |||||||||||    
T  7104294 tcttgtagacaaaacgcatgtttgaacggcttgtttggtatgcaaagaggagagtatgcgaagaagaacacagtccggcaaatcactgagtctgtctt 7104391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 4149667 - 4149545
Alignment:
Q  117 cttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaa 212  Q
    ||||||||||||||||    | |||||||||| ||| ||||||||||| | |||||||||||||   || |||||| ||||||| |||||||  | ||||    
T  4149667 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaatcgacagtatgagaagtaacacacaattcggtaaa 4149568  T
Q  213 tcaccgagtctgtcttgattttc 235  Q
    |||| || |||||||| ||||||    
T  4149567 tcactgattctgtcttcattttc 4149545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 4165439 - 4165317
Alignment:
Q  117 cttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaa 212  Q
    ||||||||||||||||    | |||||||||| ||| ||||||||||| | |||||||||||||   || |||||| ||||||| |||||||  | ||||    
T  4165439 cttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaatcgacagtatgagaagtaacacacaattcggtaaa 4165340  T
Q  213 tcaccgagtctgtcttgattttc 235  Q
    |||| || |||||||| ||||||    
T  4165339 tcactgattctgtcttcattttc 4165317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 2996512 - 2996599
Alignment:
Q  141 aaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtctt 228  Q
    ||||||||||||||||| || | ||| ||||||||| | || ||||||||||| | ||||||||||| ||| |||| ||| |||||||    
T  2996512 aaaatgcaagtttgaactgcatcttttgtgttcaaaaatgaaagtatgtgaaggataacacaatcagttaagtcactgagcctgtctt 2996599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 7178005 - 7177938
Alignment:
Q  138 gacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatc 205  Q
    |||||||  ||||||||||  |||| ||||||||||||| ||||| |||||||||||| |||||||||    
T  7178005 gacaaaacacaagtttgaaaagcgtatttggtgttcaaaaaggagtgtatgtgaagtagaacacaatc 7177938  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 476101 - 476016
Alignment:
Q  131 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 216  Q
    |||| |||| ||||| |||||||||||||| | ||||| ||| ||| |||||||| ||||||| | || |||||| ||||||||||    
T  476101 tcttttggataaaatacaagtttgaacggcttctttggcgtttaaaaaggagagtgtgtgaaggagaatacaatctgataaatcac 476016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 25601769 - 25601731
Alignment:
Q  131 tcttgtggacaaaatgcaagtttgaacggcgtgtttggt 169  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  25601769 tcttgtggacaaaatgcaagtttgaacagcatgtttggt 25601731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 7126021 - 7125904
Alignment:
Q  102 aagggatggaagacgcttccagagattct----tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaa 197  Q
    ||||| ||||||||| |||||||||||||    |||| ||||||| || |||||||||| |||  |||| || | |||||| |||||||| ||||| | |    
T  7126021 aagggttggaagacgtttccagagattcttccatcttttggacaagatacaagtttgaatggctagtttagtatccaaaga-gagagtatttgaagaaga 7125923  T
Q  198 acacaatcagataaatcac 216  Q
    |||||||| | ||||||||    
T  7125922 acacaatcgggtaaatcac 7125904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 7177898 - 7177801
Alignment:
Q  131 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtctt 228  Q
    |||| ||||||  |||||||||||||   | ||||||||||||||| ||||||||||||  || | || |||||||| |||||| | |||||| ||||    
T  7177898 tcttatggacagtatgcaagtttgaataacctgtttggtgttcaaaaaggagagtatgtacagaagaatacaatcaggtaaatcgctgagtctatctt 7177801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 14288925 - 14288997
Alignment:
Q  144 atgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 216  Q
    ||||||||||||||||||| |||||| |||||| | || |  |||||||||||||| ||||||| ||||||||    
T  14288925 atgcaagtttgaacggcgtatttggttttcaaaaaagacataatgtgaagtaaaacgcaatcaggtaaatcac 14288997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 238
Target Start/End: Complemental strand, 3978162 - 3978055
Alignment:
Q  131 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtcttga 230  Q
    ||||||||| |||| |||||||||||| ||||| |||||||| ||| | |||||||||||||| | ||  |  |||| ||| || | ||||||||||| |    
T  3978162 tcttgtggataaaacgcaagtttgaaccgcgtggttggtgtttaaaaacgagagtatgtgaagaataatgctttcaggtaagtcgctgagtctgtcttca 3978063  T
Q  231 ttttcgct 238  Q
    ||||||||    
T  3978062 ttttcgct 3978055  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 29676539 - 29676507
Alignment:
Q  136 tggacaaaatgcaagtttgaacggcgtgtttgg 168  Q
    ||||||||||||||||||||||| |||||||||    
T  29676539 tggacaaaatgcaagtttgaacgacgtgtttgg 29676507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 52186889 - 52186813
Alignment:
Q  131 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcag 207  Q
    |||| ||||||||||||| ||||||||||| ||||| | ||||| | ||||||||| ||| || | |||| ||||||    
T  52186889 tcttttggacaaaatgcaggtttgaacggcctgttttgcgttcagaaaggagagtaggtggaggagaacagaatcag 52186813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 25064313 - 25064237
Alignment:
Q  131 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcag 207  Q
    ||||| |||||| ||||| ||||| || || ||||||||||  | | |||||||||||||||||| |||||||||||    
T  25064313 tcttggggacaatatgcatgtttggactgcatgtttggtgtctagaaaggagagtatgtgaagtagaacacaatcag 25064237  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 38142201 - 38142266
Alignment:
Q  170 gttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcaccgagtctgtcttgattttc 235  Q
    ||||||| |||||||||||||||| | |||||| |||| ||| || | ||||||||||| ||||||    
T  38142201 gttcaaaaaggagagtatgtgaaggataacacagtcaggtaagtcgctgagtctgtcttcattttc 38142266  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 7022097 - 7022045
Alignment:
Q  164 tttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaatcac 216  Q
    |||||||| |||| |||||||||||||||||| || ||||| || ||||||||    
T  7022097 tttggtgtccaaaaaggagagtatgtgaagtacaagacaattaggtaaatcac 7022045  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 43864075 - 43864136
Alignment:
Q  131 tcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaa 192  Q
    |||| ||||||||||||||||||||||||| | ||| |  |||||| |||| ||||||||||    
T  43864075 tcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaa 43864136  T

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Target: scaffold0896 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 1543 - 1474
Alignment:
Q  111 aagacgcttccagagattcttc----ttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaa 176  Q
    ||||||||||||||||||||||    || ||| |||||  ||||||||||| |||| |||||||||||||    
T  1543 aagacgcttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaa 1474  T

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