View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15412_low_1 (Length: 328)
Name: NF15412_low_1
Description: NF15412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15412_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 3849650 - 3849945
Alignment:
| Q |
16 |
ataagaccgttaaatttaattaatgatctagatctgctaagaataaaaatgagagcatatacaattctcacactgtatcacggagcccacgtctaccctc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3849650 |
ataagaccgttaaatttaattaatgatctagatctgctaagaataaaaatgagagcatatacaattctcacactgtatcacggagcccacatctaccctc |
3849749 |
T |
|
| Q |
116 |
cttctcacgtacatgttgtgattcaatggaagaaacttttcagattttactgcaaggtgcttcaatagtgcaatttcttgagggctcttgtaaagtttac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3849750 |
cttctcacgtacatgttgtgattcaatggaagaaacttttcagattttactgcaaggtgcttcaatagtgcaatttcttgagggctcttgtaaagtttac |
3849849 |
T |
|
| Q |
216 |
gagaaagaatttaattggtgaatattaggagttatgttggcagcaattgcagttgccctagcaagagcagttaacatttattattatgtaggtgaa |
311 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3849850 |
gagaaagaatttaattggtgagtattaggagttatgttggcagcaattgcagttgccctagcaagagcagttaacatttattattatgtaggtgaa |
3849945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 35399938 - 35399643
Alignment:
| Q |
16 |
ataagaccgttaaatttaattaatgatctagatctgctaagaataaaaatgagagcatatacaattctcacactgtatcacggagcccacgtctaccctc |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| |
|
|
| T |
35399938 |
ataagaccgttagatttaattaatgatctaaatctgctaaaaataaaaatgagagcatatacaattctgacactgtatcacggaccccacttctaccctc |
35399839 |
T |
|
| Q |
116 |
cttctcacgtacatgttgtgattcaatggaagaaacttttcagattttactgcaaggtgcttcaatagtgcaatttcttgagggctcttgtaaagtttac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35399838 |
cttctcacgtacatgttgtgattcaatggaagaaacttttcagattttactgcaaggtgcttcagtagtgcaatttcttgagggctcttgtaaagtttat |
35399739 |
T |
|
| Q |
216 |
gagaaagaatttaattggtgaatattaggagttatgttggcagcaattgcagttgccctagcaagagcagttaacatttattattatgtaggtgaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
35399738 |
gagaaagaatttaattggtgaatattaggagttatgttggcagcaattgcagttgccctaacaagagcagttaacatttattattatgtaggtgaa |
35399643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 169 - 311
Target Start/End: Original strand, 22632583 - 22632723
Alignment:
| Q |
169 |
aaggtgcttcaatagtgcaatttcttgagggctcttgtaaagtttacgagaaagaatttaattggtga--atattaggagttatgttggcagcaattgca |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||| |||||||||||||| | ||||| |
|
|
| T |
22632583 |
aaggtgcttcaatagtgcaatttcttgagggctcttgtaaa-ttgacgagaaagaatttaatcggtgaagatattagtagttatgttggcagtatttgca |
22632681 |
T |
|
| Q |
267 |
gttgccctagcaagagcagttaacatttattattatgtaggtgaa |
311 |
Q |
| |
|
|||||||| ||||||| ||| || ||||||||||| |||||| |
|
|
| T |
22632682 |
gttgccct---aagagcatataatatgtattattatgttggtgaa |
22632723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 22632375 - 22632454
Alignment:
| Q |
16 |
ataagaccgttaaatttaattaatgatctagatctgctaagaataaaaatgagagcatatacaattctcacactgtatca |
95 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| || ||||||| ||||||| | ||||||| ||||||||||||| |
|
|
| T |
22632375 |
ataaaaccgttagatttaattaatgatctagatctgttataaataaaagtgagagcgtttacaattgtcacactgtatca |
22632454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 32350344 - 32350258
Alignment:
| Q |
180 |
atagtgcaatttcttgagggctcttgtaaagtttacgagaaagaatttaattggtga--atattaggagttatgttggcagcaattg |
264 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||||||||||||||||||||| |||| |||||||||||||| || ||||| |
|
|
| T |
32350344 |
atagtgcaatttttttagggctcttgcaaatttgacgagaaagaatttaattggtgaagatatgaggagttatgttggtagtaattg |
32350258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 32367005 - 32366919
Alignment:
| Q |
180 |
atagtgcaatttcttgagggctcttgtaaagtttacgagaaagaatttaattggtga--atattaggagttatgttggcagcaattg |
264 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||||||||||||||||||||| |||| |||||||||||||| || ||||| |
|
|
| T |
32367005 |
atagtgcaatttttttagggctcttgcaaatttgacgagaaagaatttaattggtgaagatatgaggagttatgttggtagtaattg |
32366919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University