View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15413_high_1 (Length: 347)
Name: NF15413_high_1
Description: NF15413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15413_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 44829337 - 44829016
Alignment:
| Q |
12 |
aacctgtgagaactatcaggatgccaagcatcaacaggttacctccatatacgtcttggatacatttagccaggtgtgtttgacttataaatttcaatga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44829337 |
aacctgtgagaactatcaggatgccaagcatcaacaggttacctccatatacgtcttggatacatttagccaggtgtgtttgaattataaatttcaatga |
44829238 |
T |
|
| Q |
112 |
catgttgtgaatcctattacatgaaaatttttaggaagtgaaagtgtatgtttaatatgcatttgatgtcaaatgttattgatcaatctatgttaaattt |
211 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44829237 |
catgttgtgaatcctcttacatgaaaatttttaggaagtgaaagtgtatgtttaatatgcatttgatgtcaaatgttattgatcaatctatgttaaattt |
44829138 |
T |
|
| Q |
212 |
gtgtcgtctatttactactttttgaaaacatttcttgcaaaatagaaatgaaaaaatgactgcagatcaggcagtttctagaaaaagaaatgtatattat |
311 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44829137 |
gtgtcgtctatttactactttctgaaaacatttcttgcaaaatagaaatgaaaaaatgactgcagatcaggcagtttctagaaaaagaaatgtatattat |
44829038 |
T |
|
| Q |
312 |
aatcatcaggaaggtgaaacat |
333 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
44829037 |
aatcatcaggaaggtgaaacat |
44829016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University