View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15413_high_1_N (Length: 404)
Name: NF15413_high_1_N
Description: NF15413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15413_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 35409718 - 35410092
Alignment:
| Q |
1 |
attaggaattaattttcgcattaattgtggccggactggaacatatccaccataggggtattgactgaagttcaagacagcatgttgcgctgatacagtc |
100 |
Q |
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| T |
35409718 |
attaggaattaattttcgcattaattgtggccggattggaacatatccaccataggggtattgactgaagttcaagacagcatgttgcgctgatacagtc |
35409817 |
T |
|
| Q |
101 |
cagataatggtggtaagcaaggagatgagatcctcaggtgtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaatt |
200 |
Q |
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| T |
35409818 |
cagataatggtggtaagcaaggagatgagatcctcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaatt |
35409917 |
T |
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| Q |
201 |
ctttgtaccaggactggagttcattgtcagaagaaacggcatttaaatctttgtagtaatggttcacacaggtcctgaccaacttctctatactagtcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
35409918 |
ctttgtaccaggactggagttcattgtcagaagaaatggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagacca |
35410017 |
T |
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| Q |
301 |
tatggggagtccatcagccgcataaggataatcttcagtaagtagtctaatgccatgtggctgagtggcatctgg |
375 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
35410018 |
tatgaggagtccatcagccgcataaggataatcttcaataagtagtctaatgccatgtggccgagtggcatctgg |
35410092 |
T |
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