View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15413_high_9 (Length: 330)
Name: NF15413_high_9
Description: NF15413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15413_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 7348065 - 7348336
Alignment:
| Q |
20 |
taataaacgagaagttgcaacttttcaaaagagattaaaagcaaaatgaaaccattgataatcataataactaagaagatgaagattttgatgacttgag |
119 |
Q |
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| T |
7348065 |
taataaacgagaagttgcaacttttcaaaagagattaaaagcaaaatgaaaccattgatgatcataataactaagaagatgaagattttgatgacttgag |
7348164 |
T |
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| Q |
120 |
ataagccagcagaaaattttggaggaatttgactctatcctccacagcttgaatgtcatctctgatagtttcaaatttccctttcaaatacttcaaaatc |
219 |
Q |
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| T |
7348165 |
ataagccagcagaaaattttggaggcacttgactctatcctccacagcttgaatgtcatctctgatagtttcaaatttccctttcaaatacttcaaaatc |
7348264 |
T |
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| Q |
220 |
ttcagaagattatccaacggagatacctccctctcctgacgtatcttatcaattacaatcatcacaggttct |
291 |
Q |
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| T |
7348265 |
ttcaaaagattatccaacggagatacctccctctcctgacgtaacttatcaattacaatcatcaccggttct |
7348336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 7365402 - 7365498
Alignment:
| Q |
24 |
aaacgagaagttgcaacttttcaaaagagattaaaagcaaaatgaaaccattgataatcataataactaagaagatgaagattttgatgacttgagataa |
123 |
Q |
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| T |
7365402 |
aaaccagaagttgcaacatttcaaaagagattaaaagcaaaacgaaaccattgataatc---ataactgagaagatgaagatgttgctgatttgagataa |
7365498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 7373321 - 7373369
Alignment:
| Q |
86 |
ataactaagaagatgaagattttgatgacttgagataagccagcagaaa |
134 |
Q |
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| T |
7373321 |
ataactgagaagatgaagattttgctgacttgagataaaccagcagaaa |
7373369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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