View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15414_high_20 (Length: 322)
Name: NF15414_high_20
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 173 - 266
Target Start/End: Original strand, 9381800 - 9381890
Alignment:
| Q |
173 |
ataagaagatgatataataagagaataattttgatcgttaccgtaaaatattctacacaatcaacctattacaatacatcatcttttttaagtt |
266 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9381800 |
ataagaagatgatataa---gagaataattttgattgttactgtaaaatattctacacaatcaacctatcacaatacatcatcttttttaagtt |
9381890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 9399204 - 9399253
Alignment:
| Q |
9 |
aattatactccttcccgtcaggattattggcaaaaatgattaacttcaca |
58 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
9399204 |
aattatactcctttcggtcaggattattgacaaaaatgattaacttcaca |
9399253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 171
Target Start/End: Original strand, 9399335 - 9399366
Alignment:
| Q |
140 |
cattagcacatacccataagcatcatgtgtga |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9399335 |
cattagcacatacccataagcatcatgtgtga |
9399366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University