View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_high_24 (Length: 299)
Name: NF15414_high_24
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_high_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 299
Target Start/End: Complemental strand, 6601769 - 6601482
Alignment:
| Q |
12 |
atcatcagaaaacagatcaaacatatactttctgacagaagaaagtctgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaataccag |
111 |
Q |
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| T |
6601769 |
atcatcagaaaacagatcaaacatatactttctgacagaagaaagtctgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaataccag |
6601670 |
T |
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| Q |
112 |
atcatttcttttgaacctgcaacaagaagacaagtgattattttctcttatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatatatc |
211 |
Q |
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| T |
6601669 |
atcatttcttttgaacctgcaacaagaagacaagtgattattttctcttatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatatatc |
6601570 |
T |
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| Q |
212 |
tataaactaagctgacaacattttcaactacttttcatgaactgaaatctttatttccacataaaagaacaaaatctgaaagaatccc |
299 |
Q |
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| T |
6601569 |
tataaactaagctgacaacattttcaactacttttcatgaactgaaatctttatttccacataaaagaacaaaatctgaaagaatccc |
6601482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 297
Target Start/End: Original strand, 3701774 - 3702059
Alignment:
| Q |
12 |
atcatcagaaaacagatcaaacatatactttctgacagaagaaagtctgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaataccag |
111 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701774 |
atcatcagaaaacaaatcaaacatatactttctgacagaacaaagtccgattcaaaacacgactgcaattgccaaaagtcgaaagagcttttaataccag |
3701873 |
T |
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| Q |
112 |
atcatttcttttgaacctgcaacaagaagacaagtgattattttctcttatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatatatc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701874 |
atcatttcttttgaacctgcaacaagaagacaagtgagtattttctctaatcattttcaataagaaaaagcaaatgaaaacaacaaaattaacatatatc |
3701973 |
T |
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| Q |
212 |
tataaactaagctgacaacattttcaactacttttcatgaactgaaatctttatttccacataaaagaacaaaatctgaaagaatc |
297 |
Q |
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| T |
3701974 |
cataaactaagctgacaacattttgaactacttttcatgaactgaaatctttatttccacataaaagaaaaaaatctgaaagaatc |
3702059 |
T |
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