View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_high_33 (Length: 252)
Name: NF15414_high_33
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_high_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 15 - 252
Target Start/End: Original strand, 45525724 - 45525961
Alignment:
| Q |
15 |
tgaatgtgataaagccaaatcctctagatctaccagtttcacgatccataattatccttgctacaaagagcatgatattaaagagatcattaccaaataa |
114 |
Q |
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| T |
45525724 |
tgaatgtgataaagccaaatcctctagatctaccagtttcacgatccataattatccttgctacaaagagcatgatattaaagagatcattaccaaataa |
45525823 |
T |
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| Q |
115 |
aaaacaattgcaataattagacaaaaaactcattatacatgacaaaaagaaagcattgagtcaaactatatttaccatcaagaacttcaccatattttga |
214 |
Q |
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| T |
45525824 |
aaaacaattgcaataattagacaaaaaactcattatacatgacaaaaagaaagcattgagtcaaactatatttaccgtcaagaacttcaccatatcttga |
45525923 |
T |
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| Q |
215 |
aaaagcttccctcaaactattttcatcagttgaatatg |
252 |
Q |
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| T |
45525924 |
aaaagcttccctcaaactattttcatcagttgaatatg |
45525961 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 7896793 - 7896845
Alignment:
| Q |
25 |
aaagccaaatcctctagatctaccagtttcacgatccataattatccttgcta |
77 |
Q |
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| T |
7896793 |
aaagccaaatcctttggacctaccagattcgcgatccataattatccttgcta |
7896845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 7896974 - 7897026
Alignment:
| Q |
192 |
tcaagaacttcaccatattttgaaaaagcttccctcaaactattttcatcagt |
244 |
Q |
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| T |
7896974 |
tcaagaacttggccatattttgaaaaagcatcgctcaaactttgttcatcagt |
7897026 |
T |
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