View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_high_5 (Length: 590)
Name: NF15414_high_5
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 355
Target Start/End: Complemental strand, 5885326 - 5884987
Alignment:
| Q |
12 |
catcatcatgagagttggaaggaggaggaagccaaacatattcaacaccagcatctgctatgtcagggaccttggtcttcaggaaattccaccatcctcc |
111 |
Q |
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| T |
5885326 |
catcatcatgagagttggaaggaggaggaagccaaacatattcaacaccagcatctgctatgtcagggaccttggtcttcaggaaattccaccatcctcc |
5885227 |
T |
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| Q |
112 |
ttctttttcacttgatgcccacttgaacccctacaacatgtacacatgtaattcatatcttttaaactctcttcctcactattagaaggaaaagnnnnnn |
211 |
Q |
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| T |
5885226 |
ttctttttcacttgatgcccacttgaacccctacaacatgtacacatgtaattcatatcttttaaactctcttccccactattagaaggaaaagaaaaaa |
5885127 |
T |
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| Q |
212 |
nnnnttacagacacacacgaacaccggacacgacactaatatggacttgcaaataccgataaaaaactggaaaannnnnnnnnnaattgaatgtaatcaa |
311 |
Q |
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| T |
5885126 |
aaaa-tacagacacacacgaacaccggacacgacactaatatggactcgcaaataccgataaaaaactggaaaa---aaaaattaattgaatgtaatcaa |
5885031 |
T |
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| Q |
312 |
catgtccatgtcggacattggacacgtcttccatctgaagtgtc |
355 |
Q |
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| T |
5885030 |
catgtccatgtcggacattggacacgtcttccatctgaagtgtc |
5884987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 430 - 572
Target Start/End: Complemental strand, 5884900 - 5884758
Alignment:
| Q |
430 |
gaaacaaagagaggagtagaaggacaaaagaatgtttatacctgaaatagtatggcagaggaagaaaaagagggaaaaatagaaatgcaaaggcaaagga |
529 |
Q |
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| T |
5884900 |
gaaacaaagagaggagtggaaggacaaaagaatgtttatacctgaaatagtatggcagaggaagaaaaagagggaaaaatagaaatgcaaaggcaaagga |
5884801 |
T |
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| Q |
530 |
agcatattgaatggagaaacttcatgtttcttaagtacgtatt |
572 |
Q |
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| T |
5884800 |
agcatattgaatggagaaacttcatgtttcttaagtatgtatt |
5884758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 360 - 388
Target Start/End: Complemental strand, 5884970 - 5884942
Alignment:
| Q |
360 |
acaaacacatgtatttcgatggtttttgc |
388 |
Q |
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| T |
5884970 |
acaaacacatgtatttcgatggtttttgc |
5884942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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