View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_high_6 (Length: 525)
Name: NF15414_high_6
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 491
Target Start/End: Complemental strand, 1896442 - 1895969
Alignment:
| Q |
17 |
actgtatgattgtagttagtgggtttaaaatgggtgttgcaattgatggatgtagcattttgcataattctctctttatttttatttgtcagatgtatta |
116 |
Q |
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| T |
1896442 |
actgtatgattgtagttagtgggtttaaaatgggtgttgcaattgatggatgtagcattttgcataattctctctttatttttatttgtcagatgtatta |
1896343 |
T |
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| Q |
117 |
catgattcattccatgtacctcgtgctaatgtacttgctttaagtgggggcaattgggcccttaagttggttgaatttcaattgctactgtgctaattaa |
216 |
Q |
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| T |
1896342 |
catgattcattccatgtacctcgtgctaatgtacttactttaagtgggggcaattgggcccttaagttggttgaatttcaattgctactgtgctaattaa |
1896243 |
T |
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| Q |
217 |
gaacaaattaggttgctaatgagtatctgtgtgagtaaattgcacatgtatatgtctcttaactgatacttctgtttcaccaatgttattatcatcattc |
316 |
Q |
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| T |
1896242 |
gaacaaattaggttgctaatgagtatctgtgtgagtaaattgcacatgtatatgtctcttaactgatacttctgtttcaccaatgttattatcatcattc |
1896143 |
T |
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| Q |
317 |
cttcnnnnnnnnnnnnnnnntgttattatcaatttatcatcaattataattatgaataattcaactgtatgataagtatcctcatgctttgatagtcaca |
416 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1896142 |
cttc-aaaaaagaaaaaaaatgttattatcaatttatcatcaattataattatgaataattcaactgtatgataagtatcctcatgctttgatagtcaca |
1896044 |
T |
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| Q |
417 |
ttaattaatcagggccacaaaatatcaatttatctttttcagtaataaaacatcaattcattttcaagcaaactc |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1896043 |
ttaattaatcagggccacaaaatatcaatttatctttttcagtaataaaacatcaattcattttcaagcaaactc |
1895969 |
T |
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