View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15414_low_1 (Length: 865)

Name: NF15414_low_1
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15414_low_1
NF15414_low_1
[»] chr4 (6 HSPs)
chr4 (602-843)||(7653562-7653803)
chr4 (274-546)||(7653859-7654130)
chr4 (1-214)||(7654190-7654403)
chr4 (377-538)||(9110228-9110390)
chr4 (377-418)||(17394645-17394686)
chr4 (153-186)||(30170251-30170284)
[»] chr7 (7 HSPs)
chr7 (374-538)||(40647078-40647242)
chr7 (749-843)||(11362343-11362436)
chr7 (374-445)||(11362031-11362102)
chr7 (319-355)||(40647232-40647268)
chr7 (374-429)||(45849618-45849673)
chr7 (317-355)||(45849590-45849628)
chr7 (319-355)||(11362005-11362041)
[»] chr6 (4 HSPs)
chr6 (377-538)||(7863938-7864100)
chr6 (749-843)||(4059295-4059388)
chr6 (374-445)||(4059021-4059092)
chr6 (319-355)||(4058995-4059031)
[»] chr5 (4 HSPs)
chr5 (417-538)||(22620184-22620305)
chr5 (749-840)||(21905454-21905544)
chr5 (374-447)||(21905807-21905880)
chr5 (319-355)||(21905870-21905906)
[»] chr3 (3 HSPs)
chr3 (740-843)||(20592627-20592730)
chr3 (374-489)||(20592984-20593099)
chr3 (319-355)||(20593089-20593125)
[»] chr1 (1 HSPs)
chr1 (153-214)||(34395929-34395990)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 602 - 843
Target Start/End: Complemental strand, 7653803 - 7653562
Alignment:
Q  602 actcgtgaaacaccaccatcgaacaccaaatcccagacaaactactgttctcaatcgaacaccaaaccaccatgaaaatccaatcgaactccaccaaacc 701  Q
    |||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  7653803 actcatgaaacaccaccatcgaacaccaaatcccagacaaaccattgttctcaatcgaacaccaaaccaccttgaaaacccaatcgaactccaccaaacc 7653704  T
Q  702 caatcaaaacccaatccttctcaatcgaacccaatcaaaacccaactgttctccctttacctccattctcaatcgaaacccaatccccaaaccaccaccg 801  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  7653703 caatcaaaacccaatccttctcaatcgaacccaatcaaaacccaactgttctcccttttcctccattctcaatcgaaacacaatccccaaaccaccaccg 7653604  T
Q  802 tgaaacccaaactcagaccccaaaccaccgtgaaacaccatc 843  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  7653603 tgaaacccaaactcagaccccaaaccaccgtgaaacaccatc 7653562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 274 - 546
Target Start/End: Complemental strand, 7654130 - 7653859
Alignment:
Q  274 tccttcggattctgccaccaaccatgtcatcaggtgtgtgcatagcactagtacaaaaaacacttattaaatctaggatttttccttnnnnnnnnnnnnn 373  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||                 
T  7654130 tccttcggattctgccaccagccgtgtcatcaggtgtgtgcatagcactagtacaaaaaatacttattaaatctaggatttttccttcaaaaaaaaaaa- 7654032  T
Q  374 tctaggattttaaatgggttgttatccacatgatttaaaaagttgggtgtcaggaaagtttttaacttctaatggtattaaattgttttaccccatttaa 473  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7654031 tctaggattttaaatgggttgttatccaaatgatttaaaaagctgggtgtaaggaaagtttttaacttctaatggtattaaattgttttatcccatttaa 7653932  T
Q  474 aaactatttatcaaaattcaaagttccaaaccaaatgtaaagcgccaagtgcccctcctaaaaaatgttcaca 546  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653931 aaactatttatcaaaattcaaagttccaaaccaaatgtaaagcgccaagtgcccctcctaaaaaatgttcaca 7653859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 7654403 - 7654190
Alignment:
Q  1 gcgactatatactgttttcctttttgttgacattaacaatccaattcatcacnnnnnnnnacaacaaaattgattaaaaatcatatctatgctcaagacg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||||||||||| ||||||||    
T  7654403 gcgactatatactgttttcctttttgttgacattaacaatccaattcatcacttttttttacaacaaaattaattaaaaatcatatctatgttcaagacg 7654304  T
Q  101 aacaaattcatgtaagacataaacaacataataaaaagcgtcttatataagcgataaatgatatttgaacatctattttataataacgtgtaaacaacta 200  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  7654303 aacaaattcatgcatgacataaacaacataataaaaagcgtcttatataagcgagaaatgatatttgaacatctattttataacaacttgtaaacaacta 7654204  T
Q  201 tccctctcatactc 214  Q
    || |||||||||||    
T  7654203 tctctctcatactc 7654190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 377 - 538
Target Start/End: Complemental strand, 9110390 - 9110228
Alignment:
Q  377 aggattttaaatgggttgttatccacatgatttaaaaagttgggtgtcaggaaagtttttaacttctaatggtattaaattgttttaccccatttaaaaa 476  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||   |||||||||||||||| ||||| ||||||||   || ||||||||||||||    
T  9110390 aggattttaaatgggttgctatccacatgacttaaaaagctgggtgcagggaaagtttttaacttgtaatgatattaaatcagttgaccccatttaaaaa 9110291  T
Q  477 ctatttatcaaaattcaaag-ttccaaaccaaatgtaaagcgccaagtgcccctcctaaaaaa 538  Q
    |||||| ||||||||||||| || |||||||| || ||||||||||||| |||||||||||||    
T  9110290 ctatttgtcaaaattcaaagttttcaaaccaagtgcaaagcgccaagtgtccctcctaaaaaa 9110228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 418
Target Start/End: Complemental strand, 17394686 - 17394645
Alignment:
Q  377 aggattttaaatgggttgttatccacatgatttaaaaagttg 418  Q
    |||||||||| ||||||| ||||||||||| |||||||||||    
T  17394686 aggattttaagtgggttgatatccacatgacttaaaaagttg 17394645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 30170284 - 30170251
Alignment:
Q  153 gataaatgatatttgaacatctattttataataa 186  Q
    |||||||||||||| |||||||||||||||||||    
T  30170284 gataaatgatatttcaacatctattttataataa 30170251  T

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Target: chr7 (Bit Score: 125; Significance: 6e-64; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 374 - 538
Target Start/End: Complemental strand, 40647242 - 40647078
Alignment:
Q  374 tctaggattttaaatgggttgttatccacatgatttaaaaagttgggtgtcaggaaagtttttaacttctaatggtattaaattgttttaccccatttaa 473  Q
    |||||||||||||||| |||| ||||||||||| |||||||| ||||||| | | || |||||||||||||||| ||||||||||||| |||||||||||    
T  40647242 tctaggattttaaatgagttgctatccacatgacttaaaaagctgggtgtaatggaaatttttaacttctaatgatattaaattgtttcaccccatttaa 40647143  T
Q  474 aaactatttatcaaaattcaaagttccaaaccaaatgtaaagcgccaagtgcccctcctaaaaaa 538  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40647142 aaactatttatcaaaattcaaagttccaaaccaaatgtaaagcgccaagtgcccctcctaaaaaa 40647078  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 749 - 843
Target Start/End: Original strand, 11362343 - 11362436
Alignment:
Q  749 gttctccctttacctccattctcaatcgaaacccaatccccaaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacaccatc 843  Q
    ||||||||||| |||||||| ||||||| ||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11362343 gttctcccttttcctccattttcaatcgtaacccaatcct-aaaccaccaccgtgaaacccaaagtcagaccccaaaccaccgtgaaacaccatc 11362436  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 374 - 445
Target Start/End: Original strand, 11362031 - 11362102
Alignment:
Q  374 tctaggattttaaatgggttgttatccacatgatttaaaaagttgggtgtcaggaaagtttttaacttctaa 445  Q
    ||||||||||||||||||||||||||||| ||| |||||| | |||||||  ||||||||||||||| ||||    
T  11362031 tctaggattttaaatgggttgttatccacctgacttaaaatgctgggtgtagggaaagtttttaactcctaa 11362102  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 40647268 - 40647232
Alignment:
Q  319 cactagtacaaaaaacacttattaaatctaggatttt 355  Q
    |||||||||||||||||||||||||||||||||||||    
T  40647268 cactagtacaaaaaacacttattaaatctaggatttt 40647232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 374 - 429
Target Start/End: Original strand, 45849618 - 45849673
Alignment:
Q  374 tctaggattttaaatgggttgttatccacatgatttaaaaagttgggtgtcaggaa 429  Q
    ||||||||||||||||||||| |||||||| || |||||||| ||||||| |||||    
T  45849618 tctaggattttaaatgggttgctatccacacgacttaaaaagctgggtgtaaggaa 45849673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 45849590 - 45849628
Alignment:
Q  317 agcactagtacaaaaaacacttattaaatctaggatttt 355  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  45849590 agcattagtacaaaaaacacttattaaatctaggatttt 45849628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 11362005 - 11362041
Alignment:
Q  319 cactagtacaaaaaacacttattaaatctaggatttt 355  Q
    |||||||||||||||||||||||| ||||||||||||    
T  11362005 cactagtacaaaaaacacttattacatctaggatttt 11362041  T

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Target: chr6 (Bit Score: 95; Significance: 5e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 377 - 538
Target Start/End: Complemental strand, 7864100 - 7863938
Alignment:
Q  377 aggattttaaatgggttgttatccacatgatttaaaaagttgggtgtcaggaaagtttttaacttctaatggtattaaattgttttaccccatttaaaaa 476  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||  ||||||||||||||||| ||||| |||||||| |||| ||||||||| ||||    
T  7864100 aggattttaaatgggttgctatccacatgacttaaaaagctgggtgcaaggaaagtttttaacttgtaatgatattaaatcgtttgaccccattttaaaa 7864001  T
Q  477 ctatttatcaaaattcaaag-ttccaaaccaaatgtaaagcgccaagtgcccctcctaaaaaa 538  Q
     ||||| ||||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||    
T  7864000 gtatttgtcaaaattcaaagtttccaaaccaagtgtaaagggccaagtgtccctcctaaaaaa 7863938  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 749 - 843
Target Start/End: Original strand, 4059295 - 4059388
Alignment:
Q  749 gttctccctttacctccattctcaatcgaaacccaatccccaaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacaccatc 843  Q
    ||||||||||| |||||||| ||||||  ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4059295 gttctcccttttcctccattttcaatcataacccaatccc-aaaccaccaccgtgaaacccaaagtcagaccccaaaccaccgtgaaacaccatc 4059388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 374 - 445
Target Start/End: Original strand, 4059021 - 4059092
Alignment:
Q  374 tctaggattttaaatgggttgttatccacatgatttaaaaagttgggtgtcaggaaagtttttaacttctaa 445  Q
    ||||||||||||||||||||||||||||| ||| |||||| | ||||||| |||||||||||||||| ||||    
T  4059021 tctaggattttaaatgggttgttatccacctgacttaaaatgctgggtgtaaggaaagtttttaactcctaa 4059092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 4058995 - 4059031
Alignment:
Q  319 cactagtacaaaaaacacttattaaatctaggatttt 355  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4058995 cactagtacaaaaaacacttattacatctaggatttt 4059031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 417 - 538
Target Start/End: Original strand, 22620184 - 22620305
Alignment:
Q  417 tgggtgtcaggaaagtttttaacttctaatggtattaaattgttttaccccatttaaaaactatttatcaaaattcaaagttccaaaccaaatgtaaagc 516  Q
    ||||||| || |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  22620184 tgggtgtaagaaaagtttttaacttctaatgatattaaattgtttcatcccatttaaaaactatttattaaaatttaaagttccaaaccaaatgtaaagc 22620283  T
Q  517 gccaagtgcccctcctaaaaaa 538  Q
    ||||||||||||||||||||||    
T  22620284 gccaagtgcccctcctaaaaaa 22620305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 749 - 840
Target Start/End: Complemental strand, 21905544 - 21905454
Alignment:
Q  749 gttctccctttacctccattctcaatcgaaacccaatccccaaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacacc 840  Q
    ||||||| ||| | |||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21905544 gttctcctttttcgtccattttcaatcgcaacccaatccc-aaaccaccaccgtgaaacccaaattcagaccccaaaccaccgtgaaacacc 21905454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 374 - 447
Target Start/End: Complemental strand, 21905880 - 21905807
Alignment:
Q  374 tctaggattttaaatgggttgttatccacatgatttaaaaagttgggtgtcaggaaagtttttaacttctaatg 447  Q
    |||||||||||||||||| || ||||||||||| |||||||||| ||||| |||||| ||||||||||||||||    
T  21905880 tctaggattttaaatgggatgctatccacatgacttaaaaagttaggtgtaaggaaaatttttaacttctaatg 21905807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 21905906 - 21905870
Alignment:
Q  319 cactagtacaaaaaacacttattaaatctaggatttt 355  Q
    |||||||||||||||||||||||||||||||||||||    
T  21905906 cactagtacaaaaaacacttattaaatctaggatttt 21905870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 740 - 843
Target Start/End: Complemental strand, 20592730 - 20592627
Alignment:
Q  740 aacccaactgttctccctttacctccattctcaatcgaaacccaatccccaaaccaccaccgtgaaacccaaactcagaccccaaaccaccgtgaaacac 839  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  20592730 aacccaatcgttctcccttttcctccattctcaatcgaaacccaatccccaaaccaccactgtgaaacccaagctcagaccccaaaccaccgtgaaacac 20592631  T
Q  840 catc 843  Q
    ||||    
T  20592630 catc 20592627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 374 - 489
Target Start/End: Complemental strand, 20593099 - 20592984
Alignment:
Q  374 tctaggattttaaatgggttgttatccacatgatttaaaaagttgggtgtcaggaaagtttttaacttctaatggtattaaattgttttaccccatttaa 473  Q
    ||||||||||||||||| ||| ||||||||||| |||||||| ||||||| |||||||||||||||| |||||| ||||||||||||| |||||||||||    
T  20593099 tctaggattttaaatggcttgctatccacatgacttaaaaagctgggtgtaaggaaagtttttaactactaatgatattaaattgtttcaccccatttaa 20593000  T
Q  474 aaactatttatcaaaa 489  Q
    ||||||||||||||||    
T  20592999 aaactatttatcaaaa 20592984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 319 - 355
Target Start/End: Complemental strand, 20593125 - 20593089
Alignment:
Q  319 cactagtacaaaaaacacttattaaatctaggatttt 355  Q
    |||||||||||||||||||||||||||||||||||||    
T  20593125 cactagtacaaaaaacacttattaaatctaggatttt 20593089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 34395990 - 34395929
Alignment:
Q  153 gataaatgatatttgaacatctattttataataacgtgtaaacaactatccctctcatactc 214  Q
    ||||||||||||||| ||||||||||||| | ||| | | ||||||| || |||||||||||    
T  34395990 gataaatgatatttgtacatctattttatgacaacttttgaacaactttctctctcatactc 34395929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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