View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15414_low_10 (Length: 477)
Name: NF15414_low_10
Description: NF15414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15414_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 156 - 461
Target Start/End: Original strand, 39933642 - 39933951
Alignment:
| Q |
156 |
gaccatgctgtgttatatttcttctacggatattgttacttgagaattgttttatggaccccctaattcctcataagcccccaaaagatnnnnnnnn--- |
252 |
Q |
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| T |
39933642 |
gaccatgctgtgttatatttcttctacggatattgttacttgagaattgttttatggaccccctaattcctcataagcccccaaaagataaaaaaaaaaa |
39933741 |
T |
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| Q |
253 |
-tacccttataaggaaattgctctttaggcacctagnnnnnnnnctgaacggtggttaattaccgttcagtaggacacgcgagaaacatatagtgtgata |
351 |
Q |
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| T |
39933742 |
atacccttataaggaaattgctctttaggcacttagtaaaaaaactgaacggtggttaattaccattcagtaggacacgcaagaaacatatagtgagata |
39933841 |
T |
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| Q |
352 |
aaagtaagatcgtccatannnnnnnagcctagcctgttatatgtctatttgttggaggatccagggtgttcaagggctccaggcccactaaatttttatt |
451 |
Q |
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|||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39933842 |
aaagtatgatcgtccatatttttttagcctagcctgctatatgtctatttgttggtggatccagggtgttcaagggctccaggcccactaaatttttatt |
39933941 |
T |
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| Q |
452 |
cccattttca |
461 |
Q |
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|||||||||| |
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| T |
39933942 |
cccattttca |
39933951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 39933511 - 39933578
Alignment:
| Q |
25 |
tttatgtatagtttctgttgttaccaacacttcactattctgatcaattgaattgaaacagttgtaaa |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39933511 |
tttatgtatagtttctgttgttaccaacacttcactattctgatcaattgaattgaaacagttgtaaa |
39933578 |
T |
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